| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,437,287 – 3,437,395 |
| Length | 108 |
| Max. P | 0.914058 |
| Location | 3,437,287 – 3,437,395 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.59 |
| Mean single sequence MFE | -22.21 |
| Consensus MFE | -13.66 |
| Energy contribution | -14.62 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.914058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3437287 108 + 22407834 ACCUUGCCCAUGCCACCUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG------------AUGUAUUUCAACCUUUUU ..........................(((((((((((.....((....))(((((((((..((......)).))))))))).)))))).)------------)))).............. ( -24.10) >DroSec_CAF1 26225 108 + 1 ACAUUGCCCAUGCCACUUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG------------AUGUAUUUCAACCUUUUU ..........................(((((((((((.....((....))(((((((((..((......)).))))))))).)))))).)------------)))).............. ( -24.10) >DroAna_CAF1 31226 103 + 1 -------------AGUUUUAAUAUUCAUGGCGCAGUUCCAAAAAAUUCGUG-GAACAUAAAUCAAAAACGACUAUCUCCGU-GCACACAAAAGAAGGCACCCAUAUAUUU--UCCUUUUU -------------..............((((((.((((((.........))-)))).....((......))........))-)).))...(((((((.............--.))))))) ( -14.64) >DroSim_CAF1 26416 108 + 1 ACAUUGCCCAUGCCACUUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG------------AUGUAUUUCAACCUUUUU ..........................(((((((((((.....((....))(((((((((..((......)).))))))))).)))))).)------------)))).............. ( -24.10) >DroYak_CAF1 27927 108 + 1 ACAUUACCCAUGCCACGUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG------------AUAUAUUUCAACCUUUUU ..........................(((((((((((.....((....))(((((((((..((......)).))))))))).)))))).)------------)))).............. ( -24.10) >consensus ACAUUGCCCAUGCCACUUUAAUAUUCAUAUCGCAGGCCAAAAACAUUCGUGCGAGCAUAAAUCAUCAACGACUAUGCUUGUCGCCUGCAG____________AUGUAUUUCAACCUUUUU ...............................((((((.....((....))(((((((((..((......)).))))))))).))))))................................ (-13.66 = -14.62 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:13 2006