Locus 13

Sequence ID 2L_DroMel_CAF1
Location 58,982 – 59,074
Length 92
Max. P 0.932874
window20

overview

Window 0

Location 58,982 – 59,074
Length 92
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 77.92
Mean single sequence MFE -20.95
Consensus MFE -12.48
Energy contribution -11.85
Covariance contribution -0.63
Combinations/Pair 1.29
Mean z-score -2.17
Structure conservation index 0.60
SVM decision value 1.22
SVM RNA-class probability 0.932874
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 58982 92 - 22407834
AAUAAAGU------CCACCUCUGACU--GGACAUUGCAACC-------AGCCAAAAAUUUAACAUUUUGUAGAAAGCAGUUUUAACUGCAUUUUGCAGUUUAGUCGA
........------.......(((((--((((...((....-------.))................(((((((.(((((....))))).)))))))))))))))). ( -23.20)
>DroSec_CAF1 32022 91 - 1
AAUAAAGU------CCACCUCUGACU--GAACAUUGCAACC-------AGCCAAAAAUUUAACAUU-UGUAGAAAGCAGUUUUAACUGCAUCUUGCAGUUUAGUCGA
........------.......(((((--((((..(((((..-------.........(((.((...-.)).))).(((((....)))))...)))))))))))))). ( -20.50)
>DroSim_CAF1 34338 91 - 1
AAUAAAGU------CCACCUCUGACU--GAACAUUGCAACC-------AGCCAAAAAUUUAACAUU-UGUAGAAAGCAGUUUUAACUGCAUCUUGCAGUUUAGUCGA
........------.......(((((--((((..(((((..-------.........(((.((...-.)).))).(((((....)))))...)))))))))))))). ( -20.50)
>DroEre_CAF1 33452 91 - 1
AAUAAAGU------CCUGCUUUAACU--GAACAUUGCAAUC-------GGCCAAAAAUAUAACAUU-UGUAGAAAGCAGUUUCAACUGCAUUUUGCAGUUUAGCCGA
..(((((.------....)))))...--...........((-------(((.(((..........(-(((((((.(((((....))))).))))))))))).))))) ( -20.90)
>DroYak_CAF1 31857 97 - 1
AAUAAAAUCUAAGACCUCCUUUAACU--GAACAUUGCAAUC-------GGCCGAAAAUAUAACAUU-UGUAGAAAGCAGCUUCAACUGCAUUUUGCAGUUUAGCCGA
..........................--...........((-------(((..((..........(-(((((((.((((......)))).))))))))))..))))) ( -18.40)
>DroAna_CAF1 38449 92 - 1
AUUUAGAU------CAAAAUUUAGCUGCGAAUAUUGCACUCGGCGCUCGGCCAAGAA---AACGUG-CAUAGAAAGCAGGCUCAACUGCAUUUUGUGGUUCG-----
........------........(((..((((...(((((..(((.....)))..(..---..))))-))......((((......))))..))))..)))..----- ( -22.20)
>consensus
AAUAAAGU______CCACCUCUAACU__GAACAUUGCAACC_______AGCCAAAAAUUUAACAUU_UGUAGAAAGCAGUUUCAACUGCAUUUUGCAGUUUAGUCGA
............................((((...((............))................(((((((.((((......)))).)))))))))))...... (-12.48 = -11.85 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:14 2006