Locus 1292

Sequence ID 2L_DroMel_CAF1
Location 3,422,778 – 3,422,874
Length 96
Max. P 0.793376
window2107

overview

Window 7

Location 3,422,778 – 3,422,874
Length 96
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 84.29
Mean single sequence MFE -32.06
Consensus MFE -24.08
Energy contribution -24.24
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.89
Structure conservation index 0.75
SVM decision value 0.59
SVM RNA-class probability 0.793376
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3422778 96 - 22407834
AAAC--CGAGAGAACCGAUUGUCGACGCU-UUUUUGGUGGCACAACGCGGCUGCCACGGGCAGCGUUCGAAAUCCAACUAGA------AUCGUGUUGGCAACAGU
..((--(((((((..((.....))....)-)))))))).((.(((((((((((((...))))))((((............))------)))))))))))...... ( -31.00)
>DroSec_CAF1 11666 86 - 1
------------AACCGAUUGUCGACGCU-UUUUUGGUGGCACAGCGCGGCUGCCACGGGCAGCGUUCGAAAUCCAACUAGA------AUCGUGUUGGCAACAGU
------------....(.((((((((((.-.(((((((((.....((..((((((...))))))...))....)).))))))------)..)))))))))))... ( -31.80)
>DroSim_CAF1 11852 86 - 1
------------AACCGAUUGUCGACGCU-UUUUUGGUGGCACAGCGCGGCUGCCACGGGCAGCGUUCGAAAUCCAACUAGA------AUCGUGUUGGCAACAGU
------------....(.((((((((((.-.(((((((((.....((..((((((...))))))...))....)).))))))------)..)))))))))))... ( -31.80)
>DroEre_CAF1 11888 97 - 1
AAAACCCGAGGGAACCGAUUGUCGACGCU--UUUUGGUGGCACAACGCGGCUGCCACGGGCAGCGCUCGAAAUCCAACUAGA------AUCGUGUUGGCAACAGU
....((....))....(.((((((((((.--(((((((((.....((.(((((((...)))))).).))....)).))))))------)..)))))))))))... ( -33.20)
>DroYak_CAF1 12623 92 - 1
AAAACA------A-------AUCGACGCUAUUUUUGGUGGCACAACGCGGCUGCCACGGGCAGCGUUCGAAAUCCAAGUAGAAUUGGAAUCGUGUUGGCAACAGU
......------.-------.....(((((....)))))((.(((((((((((((...))))))........(((((......)))))..)))))))))...... ( -32.50)
>consensus
AAA_________AACCGAUUGUCGACGCU_UUUUUGGUGGCACAACGCGGCUGCCACGGGCAGCGUUCGAAAUCCAACUAGA______AUCGUGUUGGCAACAGU
.........................((((......))))((.(((((((((((((...))))))(((.(....).)))............)))))))))...... (-24.08 = -24.24 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:44 2006