| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 392,480 – 392,587 |
| Length | 107 |
| Max. P | 0.999072 |
| Location | 392,480 – 392,587 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 96.07 |
| Mean single sequence MFE | -29.81 |
| Consensus MFE | -28.36 |
| Energy contribution | -28.04 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.95 |
| SVM decision value | 3.36 |
| SVM RNA-class probability | 0.999072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 392480 107 + 22407834 CGCGUCAGUCACUUACUCACUAACUAACAUUGCGGCUCGAACUAACUAAAUGGCCAACUGGGCGAGUGAGUGAGCUGACCAUAUGCGAUCACGGACAUAUAUACACA (((((..((((((((((((((......((((..((..........)).))))(((.....))).)))))))))).))))...))))).................... ( -30.00) >DroSec_CAF1 8083 107 + 1 CGCGUCAGUCACUUACUCACUAACUAACUUUGCGGCUCUAACUAUCUAAAUGGCCAACUGGGCGAGUGAGUGAGCUGACCAUAUGCGAUCACGGACAUAUAUACACA (((((..((((((((((((((..((........((((..............)))).....))..)))))))))).))))...))))).................... ( -28.66) >DroSim_CAF1 8043 107 + 1 CGCGUCAGUCACUUACUCACUAACUAACUUUGCGGCUCUAACUAACUAAAUGGCCAACUGGGCGAGUGAGUGAGCUGACCAUAUGCGAUCACGGACAUAUAUACUCA (((((..((((((((((((((..((........((((..............)))).....))..)))))))))).))))...))))).................... ( -28.66) >DroEre_CAF1 14825 107 + 1 CGCGUCAGUCACUUACUCACUAACUAACUUUGUGGCUCUAACUAACUAAAUGGCCAACUAGGCGAGUGAGUGAGCUGACCAUAUGCGAUCACGGACAUAUAUACACA (((((..((((((((((((((......((...(((((..............)))))...))...)))))))))).))))...))))).................... ( -31.44) >DroYak_CAF1 8390 105 + 1 CGCGUCAGUCACUUGCUCACUAACUAACU-UGCGGCUCCAACCAACUAAAUGGCCAACU-GGCGAGUGAGUGAGCUGACCAUAUGCGAUCACGGACAUAUAUACACA (((((..((((((..((((((........-...((......)).........(((....-))).))))))..)).))))...))))).................... ( -30.30) >consensus CGCGUCAGUCACUUACUCACUAACUAACUUUGCGGCUCUAACUAACUAAAUGGCCAACUGGGCGAGUGAGUGAGCUGACCAUAUGCGAUCACGGACAUAUAUACACA (((((..((((((((((((((............((......)).........(((.....))).)))))))))).))))...))))).................... (-28.36 = -28.04 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:52 2006