| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,415,456 – 3,415,557 |
| Length | 101 |
| Max. P | 0.994475 |
| Location | 3,415,456 – 3,415,557 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.42 |
| Mean single sequence MFE | -15.01 |
| Consensus MFE | -10.11 |
| Energy contribution | -10.22 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.67 |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.994475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3415456 101 + 22407834 -GGCAUAUUAAUUAAUUCUUAUGCUAUGGCAUUUC-CCGCAAAUAUUUGCCAUAUUUCAAACAAAAAAAAAAAGCUGUAAAGCCAAACGCAAUUUUUAUUAUU -((((((............))))))((((((....-...........))))))....................(((....))).................... ( -13.46) >DroSec_CAF1 4410 96 + 1 AGGCGUAUUAAUUAAUUCCUAUGCUAUGGCAUUUCCCCCCAAAUAUUUGCCAUAUUUUAC-------AAAAAAAUUGUAAAGCCAAACGCAAUUUUAUUUAUU ..((((..................(((((((................)))))))((((((-------((.....))))))))....))))............. ( -17.09) >DroSim_CAF1 4645 78 + 1 ------------------AUAUGCUAUGGCAUUUUAACCCAGAUAUUUGCCAUAUUUUAC-------AAAAAAGUUGUAAAGCCAAACGCAAUUUUAUUUAUU ------------------...((((((((((................)))))))((((((-------((.....))))))))......)))............ ( -14.49) >consensus _GGC_UAUUAAUUAAUUCAUAUGCUAUGGCAUUUC_CCCCAAAUAUUUGCCAUAUUUUAC_______AAAAAAGUUGUAAAGCCAAACGCAAUUUUAUUUAUU ........................(((((((................)))))))................((((((((..........))))))))....... (-10.11 = -10.22 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:33 2006