Locus 1285

Sequence ID 2L_DroMel_CAF1
Location 3,415,032 – 3,415,132
Length 100
Max. P 0.981730
window2094

overview

Window 4

Location 3,415,032 – 3,415,132
Length 100
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 95.32
Mean single sequence MFE -23.96
Consensus MFE -21.38
Energy contribution -21.58
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.89
SVM decision value 1.90
SVM RNA-class probability 0.981730
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3415032 100 + 22407834
ACUACUUGAGUGGCUGCAAAUGGCCGAAAAUCGCAUAGUA-AAAAAAUUAAGAAAACCUCGCCGGGCAAUUUUGGUAUUCAGUUAGCUGCGAGGAGAUAAA
((((..(((.(((((......)))))....)))..)))).-...............((((((..(((....(((.....)))...)))))))))....... ( -23.40)
>DroSec_CAF1 3972 100 + 1
ACUACUUGAGUGGCUGCAAAUGGCCGAAAAUCGCAUAGUA-AAAAAAUUAAGAAAACCUCGCCAGGCAAUUUUGGUAUUCAGUUAGCUGCGAGGAGAUAAA
((((..(((.(((((......)))))....)))..)))).-...............((((((..(((....(((.....)))...)))))))))....... ( -23.40)
>DroSim_CAF1 4218 99 + 1
ACUACUUGAGUGGCUGCAAAUGGCCGAAAAUCGCAUAGUA-AA-AAAUUAAGAAAACCUCGCCAGGCAAUUUUGGUAUUCAGUUAGCUGCGAGGAGAUAAA
((((..(((.(((((......)))))....)))..)))).-..-............((((((..(((....(((.....)))...)))))))))....... ( -23.40)
>DroEre_CAF1 4196 101 + 1
ACUACUUGAGUGGCUGGAAAUGGCCGAAAAUCGGGUAGUGAAAAAAAUUAAGAAAACCUCACCAGGCAAUUUAGGUAUUCAGUUAGCUGCGAGGAGAUAAA
(((((((((.(((((......)))))....))))))))).................(((((((..........)))...(((....))).))))....... ( -26.50)
>DroYak_CAF1 4633 100 + 1
ACUACUUGAGUGGCUGAAAAUGGCCGAAAAUCGCAUAGUA-AAAAAAUUACGAAAACCUCGCCAGGCAAUUUUUGUAUUCAGUUAGCUGCGAGGAGAUAAA
((((..(((.(((((......)))))....)))..)))).-...............((((((..(((.....(((....)))...)))))))))....... ( -23.10)
>consensus
ACUACUUGAGUGGCUGCAAAUGGCCGAAAAUCGCAUAGUA_AAAAAAUUAAGAAAACCUCGCCAGGCAAUUUUGGUAUUCAGUUAGCUGCGAGGAGAUAAA
((((..(((.(((((......)))))....)))..)))).................((((((..(((((((.........)))).)))))))))....... (-21.38 = -21.58 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:32 2006