Locus 1282

Sequence ID 2L_DroMel_CAF1
Location 3,414,274 – 3,414,372
Length 98
Max. P 0.937350
window2091

overview

Window 1

Location 3,414,274 – 3,414,372
Length 98
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 74.50
Mean single sequence MFE -25.19
Consensus MFE -11.86
Energy contribution -12.79
Covariance contribution 0.94
Combinations/Pair 1.11
Mean z-score -2.56
Structure conservation index 0.47
SVM decision value 1.26
SVM RNA-class probability 0.937350
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3414274 98 - 22407834
CUUUCUUUUUU---------UGCUUCGAUG---------GUCGCCAGCUUCUGGCAAUUUGUCCUCCCCGGCGACCCUCUGCAAA--CAGUGCAUCCAUCAACUGAUUGUUCAACUGU
..........(---------(((...((.(---------((((((.......(((.....)))......))))))).)).))))(--((((....(.(((....))).)....))))) ( -25.92)
>DroAna_CAF1 6003 102 - 1
CCUUC----UAU--------UUCCACAAUAAUACACAAUUCCGACUGCCUCCGACAAUUUGUCCCCCUCGG--GCCCUCGACAAA--CAGUGCAUCUAUCAACUGAUUGUUGAACUGU
.....----...--------.....(((((((.........(((..((((..(((.....)))......))--))..))).....--((((..........)))))))))))...... ( -16.90)
>DroEre_CAF1 3434 107 - 1
CUCUUUUGUUUUUUUCUGUCUGCUCCGAUG---------GUCGCCAGCUUCUGGCAAUUUGUCCUCCCCGGCGACCCUCUGCAAA--CAGUGCAUCCAUCAACUGAUUGUUCCACUGC
....................(((...((.(---------((((((.......(((.....)))......))))))).)).)))..--(((((...(.(((....))).)...))))). ( -25.82)
>DroYak_CAF1 3864 101 - 1
CCUUCCUGUUUU--------UGCUUCGAUG---------GUCGCCGGCUUCUGGCAAUUUGUCCUCCUCGGCGACCCUCUGCAAACACAGUGCAUCCAUCAACUGAUUGUUUCACUGU
..........((--------(((...((.(---------((((((((.....(((.....)))....))))))))).)).))))).((((((...(.(((....))).)...)))))) ( -32.10)
>consensus
CCUUCUUGUUUU________UGCUUCGAUG_________GUCGCCAGCUUCUGGCAAUUUGUCCUCCCCGGCGACCCUCUGCAAA__CAGUGCAUCCAUCAACUGAUUGUUCAACUGU
.......................................((((((.......(((.....)))......))))))............(((((...(.(((....))).)...))))). (-11.86 = -12.79 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:29 2006