Locus 1281

Sequence ID 2L_DroMel_CAF1
Location 3,412,671 – 3,412,786
Length 115
Max. P 0.618377
window2090

overview

Window 0

Location 3,412,671 – 3,412,786
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 84.03
Mean single sequence MFE -25.95
Consensus MFE -13.08
Energy contribution -15.60
Covariance contribution 2.52
Combinations/Pair 1.07
Mean z-score -2.61
Structure conservation index 0.50
SVM decision value 0.17
SVM RNA-class probability 0.618377
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3412671 115 - 22407834
GAAGAUCAAAGCAGGGCAAAAAACAAAUAACUAUAUAUAUACAUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAACUGAAACUGCAACUGCAGCUGCUGUCAU
...(((...(((((.((((((..(((.(((..............))).)))..))))))..(((..(((....)))....)))..........((((....)))))))))))).. ( -26.14)
>DroSec_CAF1 1678 107 - 1
GAAGAUCAAAGCAGGGCAAAAAACAAAUAACUAUAUAUAU--AUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAA------CUGCAACUGCAGCUGCUGUCAU
...(((...(((((.((((((..(((.(((.(((....))--).))).)))..))))))..(((..(((....)))....)))....------((((....)))))))))))).. ( -28.40)
>DroAna_CAF1 4297 101 - 1
GAAGAUCAAGCCCCAAACAAAAACCAAUAACAUUUUAUAU--AUUUAAUUGAGUUUCGCAAGACAAAAAGAAACUCGUUUGCG------------GCAGUAACCGCUGCUGUCAC
...(((...(((.(((((........((((....))))..--........(((((((............)))))))))))).)------------))((((.....))))))).. ( -20.00)
>DroSim_CAF1 1928 107 - 1
GAAGAUCAAAGCAGGGCAAAAAACAAAUAACUAUAUAUAU--AUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAA------CUGCAACUGCAGCUGCUGUCAU
...(((...(((((.((((((..(((.(((.(((....))--).))).)))..))))))..(((..(((....)))....)))....------((((....)))))))))))).. ( -28.40)
>DroEre_CAF1 1979 105 - 1
GAAGAUCAGAGCAGAGCAAAAAACGAAUAACUAUAU--AU--AUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAA------CUGCAACUGCAGCUGCUGUCAA
...(((...(((((.((((((..(((.(((.((...--.)--).))).)))..))))))..(((..(((....)))....)))....------((((....)))))))))))).. ( -26.80)
>consensus
GAAGAUCAAAGCAGGGCAAAAAACAAAUAACUAUAUAUAU__AUUUAAUUGAGUUUUGCAAGGCGAAAGGAAACUUGUUGGCCCAAA______CUGCAACUGCAGCUGCUGUCAU
...(((...(((((.((((((..(((.(((..............))).)))..))))))..(((..(((....)))....)))..........((((....)))))))))))).. (-13.08 = -15.60 +   2.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:28 2006