| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,411,598 – 3,411,703 |
| Length | 105 |
| Max. P | 0.741132 |
| Location | 3,411,598 – 3,411,703 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 91.03 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -22.55 |
| Energy contribution | -22.33 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3411598 105 - 22407834 UUCUGUUGUUUUUUGGUGUUUUUUUGAUUCUGGGAGUGGCGCCCAAAAAAAAAAAAUAAACUCUGAUUUGUAAGGCAGCAAAAGAAACGGAAAACACGAAACAGA .((((((((((((((.(((((((((.....((((.......))))....)))))))))...(((..(((((......))))))))..)))))))))....))))) ( -23.10) >DroSec_CAF1 585 102 - 1 UUCUGUUGUUUUUUGGUGUUUUUUUGAUUCUGGGAGUGGCGCCCAAAAAAAAAA---AAACACUGGCUUGUAAGGCAGCAAAAGAAACGGAAAACCCGAAACAGA .((((((.(((((((((((((((((..((.((((.......)))).))..))))---))))))..(((.....)))..)))))))..(((.....))).)))))) ( -29.50) >DroSim_CAF1 843 96 - 1 UUCUGUUGUUUUUUGGUGUUUUUUUGAUUCUGGGAGUGGCGCCCAAAA---------AAACUCUGGCUUGUAAGUCAGCAAAAGAAACGGAAAACCCGAAACAGA .((((((((((((((...((((((((....((((.......))))...---------.....((((((....)))))))))))))).))))))))....)))))) ( -26.50) >consensus UUCUGUUGUUUUUUGGUGUUUUUUUGAUUCUGGGAGUGGCGCCCAAAAAAAAAA___AAACUCUGGCUUGUAAGGCAGCAAAAGAAACGGAAAACCCGAAACAGA .((((((((((((((...((((((((....((((.......)))).................(((.((....)).))))))))))).))))))))....)))))) (-22.55 = -22.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:27 2006