| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 388,988 – 389,088 |
| Length | 100 |
| Max. P | 0.944280 |
| Location | 388,988 – 389,088 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.92 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -20.74 |
| Energy contribution | -20.72 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.944280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 388988 100 - 22407834 CAAAGUGGCGCUAAUUAGUUUGAGUCAUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAACACAC----------------ACACAUACACAAGAGCC----C .....((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))))...............----------------.................----. ( -21.70) >DroPse_CAF1 23854 106 - 1 CAAAGUGGCGCUAAUUAGUUUGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCGACACACGAAACACACAGAUGCACAC----------ACACACUAAUGCA----A ....(((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))).))................((((...----------.........))))----. ( -23.40) >DroSim_CAF1 4493 100 - 1 CAAAGUGGCGCUAAUUAGUUUGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAACACAC----------------AUACACACACAAGAGCC----C .....((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))))...............----------------.................----. ( -22.00) >DroEre_CAF1 11120 92 - 1 CAAAGUGGCGCUAAUUAGUUCGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAAC--------------------ACACACACAUAAGC-------- .....((((((.((((((((.(.((.(((((.(....).)))))...)).).))).)))))))))))...........--------------------..............-------- ( -17.90) >DroYak_CAF1 4661 110 - 1 CAAAGUGGCGCUAAUUAGUUCGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAUCGCACA------CACACUCGCACACACACACAAGUGCA----G ....((((((.......((.(((.((((((((.((((.....))))..(((((......)))))))))...)))).))).)).------......))).))).(((....)))..----. ( -22.94) >DroAna_CAF1 23835 104 - 1 CAAAGUGGCGCUAAUUAGUUUGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCGACACACGAAACACAC----------------ACACACAGCUCACUGGCACACA ....(((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))).)).............----------------.......(((....)))..... ( -23.60) >consensus CAAAGUGGCGCUAAUUAGUUUGAGUCGUUUGGAUAAUUGCAAAUUAAACGCAAACUUAAUUGCGCCAACACACGAAACACAC________________ACACACACACAAGUGCC____A .....((((((.((((((((((.((.(((((.(....).)))))...)).))))).)))))))))))..................................................... (-20.74 = -20.72 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:48 2006