| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,397,325 – 3,397,424 |
| Length | 99 |
| Max. P | 0.796394 |
| Location | 3,397,325 – 3,397,424 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.59 |
| Mean single sequence MFE | -29.28 |
| Consensus MFE | -13.99 |
| Energy contribution | -15.27 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3397325 99 - 22407834 UCAUUAGAAACGCUUGAUGAGCAAUAAUGAUAAGAGG--GCGAAAGCGGAAACGGA------------AGUCACAGAAGGGUGCAAAGGAUGCGGAAACGCGGGGCCUGGCCA (((((((......))))))).......((((......--((....))(....)...------------.))))......(((....(((.((((....))))...))).))). ( -27.60) >DroSec_CAF1 19780 99 - 1 UCAUUAGAAACGCUUGAUGAGCAAUAAUGAUAAGAGG--GCGAAAGCGGAAACGGA------------AGUCGCAGAAGGGUGCAAAGGAUGCGGAAACGCGGGGGCUGGCCA ((((((.....((((...))))..)))))).......--((....))(....)((.------------(((((((......)))......((((....))))..))))..)). ( -28.90) >DroSim_CAF1 19946 99 - 1 UCAUUAGAAACGCUUGAUGAGCAAUAAUGAUAAGAGG--GCGAAAGCGGAAACGGA------------AGUCGCAGAAGGGUGCAAAGGAUGCGGAAACGCGGGGGCUGGCCA ((((((.....((((...))))..)))))).......--((....))(....)((.------------(((((((......)))......((((....))))..))))..)). ( -28.90) >DroEre_CAF1 19644 111 - 1 UCAUUAGAAACGCUUGAUGAGAAAUAAUGAUAAGAGC--GCGGAAGCGGAAGCGGAUGUGAAAGUGGCAGUCGCCGAAGGGUGCAAAGGAUGCGGAAGCGCGAUGGCUGCCCA ((((......(((((....(....)...........(--((....))).)))))...))))..(.((((((((((....)))........((((....))))..)))))))). ( -36.50) >DroYak_CAF1 20468 110 - 1 UCAUUAGAAACGCUUGAUGAGCAAUAAUGAUAAGAGG--GCG-UAGCGGAAACGGAAGUGGAAGUGAAAGUCGCAGAAGGGUGCAAAGGAUGCGGAAUCGCGAUGUCUGCCCA ((((((.....((((...))))..)))))).....((--((.-...((....)).....(((.((((...(((((...............)))))..))))....))))))). ( -28.26) >DroAna_CAF1 26116 94 - 1 UCAUUAGAAACGCUUGAUGAGCAAUAAUGAUAAUACGCGGCGA----GGAGCCGGGU-UG--------AGGACCAGCCGGAAGUAAAG---GCGGAAACGGAAAAGC---UCA .................(((((...........(((.((((..----...))))(((-((--------.....)))))....)))...---.((....)).....))---))) ( -25.50) >consensus UCAUUAGAAACGCUUGAUGAGCAAUAAUGAUAAGAGG__GCGAAAGCGGAAACGGA____________AGUCGCAGAAGGGUGCAAAGGAUGCGGAAACGCGAGGGCUGGCCA ((((((.....((((...))))..)))))).........((....))((...(((..............(.(((......))))......((((....))))....))).)). (-13.99 = -15.27 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:22 2006