Locus 1274

Sequence ID 2L_DroMel_CAF1
Location 3,392,530 – 3,392,628
Length 98
Max. P 0.776462
window2082

overview

Window 2

Location 3,392,530 – 3,392,628
Length 98
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 81.59
Mean single sequence MFE -29.30
Consensus MFE -16.50
Energy contribution -17.41
Covariance contribution 0.92
Combinations/Pair 1.14
Mean z-score -2.58
Structure conservation index 0.56
SVM decision value 0.54
SVM RNA-class probability 0.776462
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3392530 98 + 22407834
UAUUCACACAAACU--ACAAACUUGGCGCAA-ACUUUGUAAG--UAGCCCAGGACGAAAAGGACUUU----------GCA------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGG
..............--.....(((((.((..-(((.....))--).))))))).(((((((((..((----------((.------..((((.....))))..))))..))))))))). ( -30.30)
>DroSec_CAF1 15061 98 + 1
UAUUCACACAAACU--ACAAACUUGGCGCAA-ACUUUGUAAG--UAGCCCAGGACGAAAAGGACUUU----------GCA------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGG
..............--.....(((((.((..-(((.....))--).))))))).(((((((((..((----------((.------..((((.....))))..))))..))))))))). ( -30.30)
>DroSim_CAF1 15198 98 + 1
UAUUCACACAAACU--ACAAACUUGGCGCAA-ACUUUGUAAG--UAGCCCAGGACGAAAAGGACUUU----------GCA------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGG
..............--.....(((((.((..-(((.....))--).))))))).(((((((((..((----------((.------..((((.....))))..))))..))))))))). ( -30.30)
>DroEre_CAF1 15021 99 + 1
UAUUCACACAAACU--ACAAACUUGGCGCAAAACUUUGUAAG--UAGCCCAGGACGAAAAGGACUUU----------GCA------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGA
..............--.....(((((.((...(((.....))--).))))))).(((((((((..((----------((.------..((((.....))))..))))..))))))))). ( -29.90)
>DroYak_CAF1 15599 100 + 1
UAUUCACACAAACUGCACAAACUUGGCGCAA-ACUUUGUAAG--UAGCCCAGGAAGAAAAGGACUUU----------GCG------AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGA
.....................(((((.((..-(((.....))--).)))))))..((((((((..((----------((.------..((((.....))))..))))..)))))))).. ( -29.10)
>DroAna_CAF1 21384 109 + 1
UAAAGA-------C--ACAAACUUGAUGCCA-ACUUUGUAGUGCAAUUCCAAGGGUCAAAGGACCUGGGGUAUCCUUACAGGCGGCAGCAGCACGACGUGGCAAUAACUUCCUUUUCGU
......-------.--..........(((((-....(((.((((....((..(((((....)))))..))...........((....)).)))).))))))))................ ( -25.90)
>consensus
UAUUCACACAAACU__ACAAACUUGGCGCAA_ACUUUGUAAG__UAGCCCAGGACGAAAAGGACUUU__________GCA______AGCAGCAGGAUGCUGAAGUAACUUCCUUUUCGG
.....................(((((.((.................))))))).(((((((((..............((........))(((.....))).........))))))))). (-16.50 = -17.41 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:20 2006