| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,380,160 – 3,380,253 |
| Length | 93 |
| Max. P | 0.724471 |
| Location | 3,380,160 – 3,380,253 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 91.55 |
| Mean single sequence MFE | -14.51 |
| Consensus MFE | -14.49 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.31 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3380160 93 - 22407834 AAAACCACCUCUUUUUCCCACC--CCC-AAGGACACUUUAAAAAAGGAUUCAACUAAUUUACUUAAUGAAGGCGAAAAAUAAUGGUGCUACAUUUU .....((((..((((((((...--...-..(((..(((.....)))..)))......((((.....)))))).))))))....))))......... ( -12.20) >DroSec_CAF1 2976 93 - 1 AAAACCAU---UUUUUCCCACCCCCCCUAAGGACACUUGAAAAAAGGAUCCAACUAAUUUACUUAAUGAAGGCGAAAAAUGAUGGUGAUACAUUUU ...(((((---((((((((...........(((..(((.....)))..)))......((((.....)))))).)))))..)))))).......... ( -16.70) >DroSim_CAF1 3015 92 - 1 AAAACCAU---UUUUUCCCAGCCCCCC-AAGGACACUUGAAAAAAGGAUUCAACUAAUUUACUUAAUGAAGGCGAAAAAUGAUGGUGAUACAUUUU ...(((((---((((((((.......(-(((....)))).........((((..............)))))).)))))..)))))).......... ( -14.64) >consensus AAAACCAU___UUUUUCCCACCCCCCC_AAGGACACUUGAAAAAAGGAUUCAACUAAUUUACUUAAUGAAGGCGAAAAAUGAUGGUGAUACAUUUU ...(((((...((((((((...........(((..(((.....)))..)))......((((.....)))))).))))))..))))).......... (-14.49 = -14.60 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:14 2006