| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 386,095 – 386,226 |
| Length | 131 |
| Max. P | 0.775494 |
| Location | 386,095 – 386,200 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.81 |
| Mean single sequence MFE | -25.76 |
| Consensus MFE | -15.99 |
| Energy contribution | -16.16 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 386095 105 + 22407834 AGUGCAAUCAGGAGCCGGCUUCUU---GGGAAGGACUCCAUAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUG- ...(((((((((((....))))).---.(((.....))).......))))))...........((((((((..(((((((.........))))))).))))))))...- ( -28.70) >DroVir_CAF1 21129 95 + 1 -CUGCAAUCAGCCACCGUU--CUC---------GAC-ACGAAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAUGGGCGUUUUCAAUAGUCACGCCCAUUAAUUGGCUG- -.......((((((..(((--.(.---------.((-(..(((.......))).)))..).)))......(((((((((...(....)..)))))))))...))))))- ( -23.30) >DroGri_CAF1 23436 96 + 1 GCUGCAAUCAGCAACCGUU--UGC---------GAC-CCGACUUCAGAUUGUUAUGUUAAAAACUAAUUAAAUGGGCGUUUUCAAUAGUCACGCCCAUUAAUUGGUUG- ((.((((((.((((....)--)))---------((.-......)).))))))...))....((((((((((.(((((((...(....)..))))))))))))))))).- ( -27.40) >DroYak_CAF1 1643 108 + 1 AGUGCAAUCAGCAGCGGGCUUCUUCCCAAGAAGGACUCCGUAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUG- ...((((((....((((..((((((....))))))..)))).....))))))...........((((((((..(((((((.........))))))).))))))))...- ( -33.50) >DroMoj_CAF1 1809 96 + 1 GCUGCAAUCAGCCACCGUU--CUC---------GAC-ACGAAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAUGGGCGUUUUCAAUAGUCACGCCCAUUAAUUGACUG- ((.((((((......(((.--...---------...-)))......))))))...)).......(((((((.(((((((...(....)..))))))))))))))....- ( -19.30) >DroAna_CAF1 20267 95 + 1 GGCGCAAUCAGUAGC----AUC----------GGGCACCGUAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUGA ...((((((......----..(----------((...)))......))))))...........((((((((..(((((((.........))))))).)))))))).... ( -22.34) >consensus GCUGCAAUCAGCAACCGUU__CUC_________GAC_CCGAAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUG_ ...((((((.....................................))))))...........(((((((...((((((...........))))))..))))))).... (-15.99 = -16.16 + 0.17)
| Location | 386,128 – 386,226 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 85.26 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -17.83 |
| Energy contribution | -17.58 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 386128 98 + 22407834 UCCAUAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUGCUCCG-CGAUCGGAGCACAUAUGAACA ......((((...(((...........((((((((..(((((((.........))))))).))))))))..((((((-....)))))))))..)))).. ( -30.20) >DroGri_CAF1 23461 85 + 1 -CCGACUUCAGAUUGUUAUGUUAAAAACUAAUUAAAUGGGCGUUUUCAAUAGUCACGCCCAUUAAUUGGUUGCUG--GUGCUCCUGCU----------- -..(((........)))........((((((((((.(((((((...(....)..)))))))))))))))))((.(--(....)).)).----------- ( -23.20) >DroSec_CAF1 1655 97 + 1 UCCAUAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUGCUCCG-CGAUCAGAGCACAUAUGAA-A ......((((...(((...........((((((((..(((((((.........))))))).))))))))..((((..-......)))))))..))))-. ( -25.30) >DroSim_CAF1 1591 96 + 1 UCCAUAU-CAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUGCUCCG-CGAUCAGAGCACAUAUGAA-A ..(((((-...................((((((((..(((((((.........))))))).)))))))).(((((..-......))))).)))))..-. ( -24.60) >DroEre_CAF1 5513 98 + 1 UCCGUAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUGCUUCG-GGAUCGGAGUACACAUGCACA ...((((((.((((.............((((((((..(((((((.........))))))).))))))))...(....-))))).))))))......... ( -27.60) >DroYak_CAF1 1679 98 + 1 UCCGUAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUGCCUUG-UGUUCGAAGUACACAUGAACA ......((((.................((((((((..(((((((.........))))))).))))))))......((-(((.......))))))))).. ( -22.10) >consensus UCCAUAUUCAGAUUGUUAUGUUAAAAACUAAUUAAAGGGGCGUUUUCAAUAACAACGCCCAUUAAUUGGAUGCUCCG_CGAUCGGAGCACAUAUGAA_A ...........................((((((((..(((((((.........))))))).)))))))).(((((.........))))).......... (-17.83 = -17.58 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:46 2006