| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,369,898 – 3,369,989 |
| Length | 91 |
| Max. P | 0.755951 |
| Location | 3,369,898 – 3,369,989 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 80.59 |
| Mean single sequence MFE | -20.58 |
| Consensus MFE | -10.82 |
| Energy contribution | -11.10 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3369898 91 - 22407834 AUGAAUACACACUCG---UUUAAUGAGUGUGAAUCGUCAUUAAGUCAUUA-GUGGUGUUCGCGUCACUUUGUUUACUCGAUUCGCAAAUUAUUCG ..(((((.(((((((---(...))))))))((((((....((((.((..(-(((..(....)..)))).))))))..))))))......))))). ( -25.30) >DroSec_CAF1 60604 80 - 1 ------------UCG---UUUAAUGAGCGCGAAUCAUCAUUAAGUCAUUAAGUGCUGUUCGCGUCACUUUGUUUAGUCGAUUCGCAAAUUAUUCA ------------..(---..((((....(((((((...((((((.((..(((((.((....)).))))))))))))).)))))))..))))..). ( -17.90) >DroSim_CAF1 57188 92 - 1 AUGAAUACACACUCG---UUUAAUGAGCGCGAAUCAUCAUUAAGUCAUUAAGUGCUGUUCGCGUCACUUUGUUUACUCGAUUCGCAAAUUAUUCA .((((((....((((---(...))))).(((((((.....((((.((..(((((.((....)).)))))))))))...)))))))....)))))) ( -19.80) >DroEre_CAF1 54990 84 - 1 ACAAAUAUAUUCUCG---UUUAAUGAGUGCGAAUCAUCAUUAA--------AUGGUGUUUGCGCCACUUUGUUUACUCGAUUCGCAAAUUAUUCA ..............(---..((((...((((((((.....(((--------((((((....))))).)))).......)))))))).))))..). ( -20.40) >DroYak_CAF1 56410 87 - 1 AUGACUACAAACUCGUUGUUUAAUGAGUGCGAAUCAUCAUUAA--------AUGGCGUUUGCGACACUUUGUUUACUCGAUUCGCAAAUUAUUCA .............(((..((((((((..........)))))))--------)..)))(((((((....(((......))).)))))))....... ( -19.50) >consensus AUGAAUACACACUCG___UUUAAUGAGUGCGAAUCAUCAUUAAGUCAUUA_GUGGUGUUCGCGUCACUUUGUUUACUCGAUUCGCAAAUUAUUCA ...........((((........)))).(((((((................(((.((....)).)))...(......)))))))).......... (-10.82 = -11.10 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:12 2006