Locus 1267

Sequence ID 2L_DroMel_CAF1
Location 3,365,741 – 3,365,842
Length 101
Max. P 0.991278
window2073

overview

Window 3

Location 3,365,741 – 3,365,842
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.28
Mean single sequence MFE -27.70
Consensus MFE -25.66
Energy contribution -25.02
Covariance contribution -0.64
Combinations/Pair 1.15
Mean z-score -1.74
Structure conservation index 0.93
SVM decision value 2.26
SVM RNA-class probability 0.991278
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3365741 101 - 22407834
AACAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAAAGGCAACGAUACCCAACUGCCUGGGGCGAUCCAUUUAGAGUUAAAAUGUUUGUACACGCAAAC
......((((..(((((((((..((((......(((..(((((............)))))..)))..((......))))))...))))))))))))).... ( -29.40)
>DroSec_CAF1 56450 101 - 1
AACAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAAAGGCAACGAUACCCAACUGCCUGGCGCGAUCCAUUUAGAGUUAAAAUGUUUGUACACGCCAAC
....(.((((..(((((((((..((((......((((..((((............))))))))....((......))))))...))))))))))))))... ( -25.60)
>DroSim_CAF1 52535 101 - 1
AACAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAAAGGCAACGAUACCCAACUGCCUGGCGCGAUCCAUUUAGAGUUAAAAUGUUUGUACACGCCAAC
....(.((((..(((((((((..((((......((((..((((............))))))))....((......))))))...))))))))))))))... ( -25.60)
>DroEre_CAF1 50975 100 - 1
AACAGAGUGUUGGUGCAAACAGGUGGCUAA-AAGUCAUAGGCAACGAUAUCAAACUGCGUGGCGCGAUCCAUUCAGAGUUAAAAUGUUUGUACACGCAACC
......((((..(((((((((..(((((..-........(....).........(((.((((......)))).))))))))...))))))))))))).... ( -27.00)
>DroYak_CAF1 52236 101 - 1
UAUAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAUAGGUAACGAUACCAAACUGCGUGGCGCGAUCCAUUUAGAUCUAAAAUGUUUGCACACGCAACC
......((((..(((((((((.(((((......))))).((((....))))...(((.((((......)))).)))........))))))))))))).... ( -30.90)
>consensus
AACAGAGUGUUGGUGCAAACAGGUGGCCAAAAAGCCAAAGGCAACGAUACCCAACUGCCUGGCGCGAUCCAUUUAGAGUUAAAAUGUUUGUACACGCAAAC
......((((..(((((((((((((((......)))...(....)...)))...(((..(((......)))..)))........))))))))))))).... (-25.66 = -25.02 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:11 2006