| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,364,206 – 3,364,326 |
| Length | 120 |
| Max. P | 0.838064 |
| Location | 3,364,206 – 3,364,326 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.91 |
| Mean single sequence MFE | -30.48 |
| Consensus MFE | -17.64 |
| Energy contribution | -16.62 |
| Covariance contribution | -1.02 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3364206 120 - 22407834 UCGGAUAACAAUAAGACCAGGGAGAGCUCACGCAAAUUGAACAAGAAGAUGAAACAGAAUGCCAAGGAGCUGACUCUCAGCUCGGUGAAGCCGACGGAGCUAUCGGUGAGCGUCACCAUG ..............(((..((((((((((..(((..(((..((......))...)))..)))....)))))..))))).(((((.(((((((....).))).))).))))))))...... ( -31.40) >DroVir_CAF1 97763 117 - 1 UCGGAUAA---UAAAGCCAGCGACAAUACGCGUAAAUCAAAUAAGAAAAUGAAGGCCAAUGCCAAAGAGCUGACACUCAGCUCCGUCAAGGCAACGGAGCAAUCGGUGGCCGUCACACUC ..((....---.....)).(((......)))..................(((.((((..((((...((((((.....))))))......))))((.((....)).)))))).)))..... ( -32.00) >DroGri_CAF1 60559 117 - 1 UCAGACAA---UAAAAUCAACGACAAUACACGCAAAUCCAACAAGAAAAUGAAGACCAAUGCCAAAGAGCUGACACUCAGCUCCAUCAAGGCAGCGGAGCAAUCAGUUAGCGUCACUCUU ........---..........(((......(((...((......)).............((((...((((((.....))))))......)))))))((....)).......)))...... ( -22.70) >DroWil_CAF1 174038 117 - 1 UCAGAUAACCAAAAGGCC---GAUAAUACACGCAAAUCGAAUAAGAAAAUGAAAACCAAUGCCAAGGAGCUCACCCUGAGCUCAGUUAAGCCUGCCGAACAAACGGUGGGCGUCACAUUA ...((((((.....((((---(((...........))))..........((.....))..)))...((((((.....)))))).)))..(((..(((......)))..))))))...... ( -30.80) >DroAna_CAF1 59076 120 - 1 UCGGACAACAACAAGACCAGGGAGAGUUCACGGAAACUCAACAAGAAGAUGAAACAGAACGCCAAAGAGUUGACGCUCAGCUCCGUGAAGCCGGCGGAGCAAUCGGUCAGUGUCACCAUG ..((...(((....((((..((...((((..(....)(((.(.....).)))....)))).))...((((....)))).(((((((.......)))))))....))))..)))..))... ( -33.00) >DroPer_CAF1 97435 114 - 1 UCGGACAACAACAAAGAC------AGUAACCGAAAGCUGAGCAAGAAGAUGAAACAGAAUGCCAAAGAGCUCACGCUGAGCUCCGUGAAGCCUGCGGAGCAGUCGGUGGGCGUCACCAUG ...............(((------.((.(((((.((((((((..........................))))).)))..(((((((.......)))))))..)))))..)))))...... ( -32.97) >consensus UCGGACAACAAUAAAACCAG_GACAAUACACGCAAAUCGAACAAGAAAAUGAAACACAAUGCCAAAGAGCUGACACUCAGCUCCGUGAAGCCAGCGGAGCAAUCGGUGAGCGUCACCAUG ...(((............................................................((((((.....))))))......((.(((.((....)).))).)))))...... (-17.64 = -16.62 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:08 2006