Locus 126

Sequence ID 2L_DroMel_CAF1
Location 383,649 – 383,769
Length 120
Max. P 0.855284
window196

overview

Window 6

Location 383,649 – 383,769
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.17
Mean single sequence MFE -45.28
Consensus MFE -37.62
Energy contribution -38.25
Covariance contribution 0.62
Combinations/Pair 1.06
Mean z-score -2.21
Structure conservation index 0.83
SVM decision value 0.81
SVM RNA-class probability 0.855284
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 383649 120 + 22407834
GGAAGAGAUCAGCUGGCGGACAGCCCCAUGCGGUGGUCAUCAUCGAUUUGCAUUGAGGCGAGUUCGUCAGCAGCUGCAACUGGGCAGCGGAAACCUCAGCCCGAAGAUGAAUCUGAAAAU
((..(((....((((((((((.((((.((((((..(((......))))))))).).)))..)))))))))).(((((......)))))(....))))..))................... ( -44.00)
>DroSec_CAF1 51281 119 + 1
GGAAGAGAUCAGCUGGCGGACAGG-CCAUGCGGUGGUCAUCAUCGAUUUGCAUUGAGGCGAGUUCGUCAGCAGCUGCAACUGGGCAGCGGAAACCUCAGCCCGAAGAUGAAUCUGAAAAU
((..(((....((((((((((..(-((((((((..(((......)))))))))...)))..)))))))))).(((((......)))))(....))))..))................... ( -41.90)
>DroSim_CAF1 51972 120 + 1
GGAAGAGAUCAGCUGGCGGACAGCCCCAUGCGGUGGUCAUCAUCGAUUUGCAUUGAGGCGAGUUCGUCAGCAGCUGCAACUGGGCAGCGGAAACCUCAGCCCGAAGAUGAAUCUGAAAAU
((..(((....((((((((((.((((.((((((..(((......))))))))).).)))..)))))))))).(((((......)))))(....))))..))................... ( -44.00)
>DroYak_CAF1 52604 117 + 1
GGAAGAGAUCAGCUGGCGGACAGCCCCAUGCGGUGGCC---AUCGAUUUGCAUUGAGGCAAGUUCCUCGGCAGCUGCAACUGGGCAGCGGAAACCUCAGUCCGCAGAUGAAUCUCUAAAC
...((((((((.(((.(((((.((((..((((((.(((---...(((((((......)))))))....))).))))))...))))((.(....)))..)))))))).)).)))))).... ( -51.20)
>consensus
GGAAGAGAUCAGCUGGCGGACAGCCCCAUGCGGUGGUCAUCAUCGAUUUGCAUUGAGGCGAGUUCGUCAGCAGCUGCAACUGGGCAGCGGAAACCUCAGCCCGAAGAUGAAUCUGAAAAU
((..(((....((((((((((.(((.((((((.((((....))))...)))).)).)))..)))))))))).(((((......)))))(....))))..))................... (-37.62 = -38.25 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:41 2006