Locus 1259

Sequence ID 2L_DroMel_CAF1
Location 3,322,531 – 3,322,628
Length 97
Max. P 0.890552
window2059

overview

Window 9

Location 3,322,531 – 3,322,628
Length 97
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 88.40
Mean single sequence MFE -25.03
Consensus MFE -20.75
Energy contribution -20.87
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.58
Structure conservation index 0.83
SVM decision value 0.96
SVM RNA-class probability 0.890552
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3322531 97 + 22407834
UAUGUCUUGACUUGGCAAACUGCCUUUAGGAAACUAUGUACAUUUGUGUACCAC-CACCCCAUUAUGUAAAGCCACCGUGUUAAGUUCAAUUAGACUA
...((((.(((((((((...((.((((((....)...(((((....)))))...-............))))).))...))))))))).....)))).. ( -21.10)
>DroSec_CAF1 8725 97 + 1
AAUGUCUUGACUUGGCAAAUUGGCUUGGGGAAACUAUGAACUUUAGUGUACCAC-CCAUACCUUACUUAAAGCCAUCGUGUUAAGUUCAAUUAGACUA
...((((.(((((((((...(((((((((...((((.......))))......)-)))............)))))...))))))))).....)))).. ( -26.10)
>DroSim_CAF1 8848 98 + 1
AAUGUCUUGACUUGGCAAAUUGGCUUGGGGAAACUAUGAACUUUAGUGUACCACCCCAUACCUUACUUAAAGCCAUCGUGUUAAGUUCAAUUAGACUA
...((((.(((((((((...((((((((((..((((.......))))......)))))............)))))...))))))))).....)))).. ( -27.90)
>consensus
AAUGUCUUGACUUGGCAAAUUGGCUUGGGGAAACUAUGAACUUUAGUGUACCAC_CCAUACCUUACUUAAAGCCAUCGUGUUAAGUUCAAUUAGACUA
...((((.(((((((((...((((((.((....))....((......))....................))))))...))))))))).....)))).. (-20.75 = -20.87 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:58 2006