Locus 1255

Sequence ID 2L_DroMel_CAF1
Location 3,313,955 – 3,314,061
Length 106
Max. P 0.533604
window2052

overview

Window 2

Location 3,313,955 – 3,314,061
Length 106
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 77.77
Mean single sequence MFE -33.47
Consensus MFE -15.70
Energy contribution -16.23
Covariance contribution 0.53
Combinations/Pair 1.19
Mean z-score -1.98
Structure conservation index 0.47
SVM decision value 0.00
SVM RNA-class probability 0.533604
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3313955 106 + 22407834
---UAUGCUU--UUAGGCACUUCGUACAAUGUUCUUGUAAGCGCGGUGAACAACAGUCGUUGUCCGGAUGCGCCGUGCAGCGAGUACGGAAUCAAAGAAAAGAAUGCAUCU
---..((((.--...)))).(((((((..(((((((((....)))).)))))....((((((..(((.....)))..)))))))))))))..................... ( -30.90)
>DroVir_CAF1 21195 97 + 1
------CCCA--ACAGGCACCACAUACAAUGUGUUGGUGAGCGCUGUGAAUAGCACUCGCUGCCCGGAUGCGCCCUGCAGCGAGUACACCAUCAAACAGAAGC------CC
------....--...(((..(((((...))))).(((((...((((....))))(((((((((..((.....))..))))))))).)))))..........))------). ( -35.50)
>DroPse_CAF1 24826 98 + 1
-----CUUUU--GCAGGCACUUCCUACAAUGUCCUUGUCAGUGCCGUGAACAACACACGCUGUCCGGAUGCCCCCUGCAGCGAGUACGGCAUCAAGGAGAAGC------CA
-----.....--...(((.....(......)((((((...(((((((.......((.((((((..((.....))..)))))).)))))))))))))))...))------). ( -31.81)
>DroWil_CAF1 111252 100 + 1
-----UUGUUGCACAGGCACUUCCUACAACGUGCUUGUCAGUGCUGUGAACAACACACGCUGUCCGGAUGCCCCGUGCAGCGAGUACGGCAUCAAAGAGAAGC------CA
-----....((.((((((((..........))))))))))((((((((.....))).(((((..(((.....)))..))))))))))(((.((.....)).))------). ( -39.00)
>DroAna_CAF1 162 103 + 1
UAUUUUACAU--UCAGGCACUUCAUACAAUGUCCUUGUGAGUGCUCUGAAUAACAGUCGGUGUCCGGAUGCGCCGUGCAGCGAAUAUGGCAUCAAACAGAAGC------CC
........((--((((((((((...((((.....)))))))))).)))))).....(((.((..(((.....)))..)).)))....(((.((.....)).))------). ( -31.80)
>DroPer_CAF1 27004 98 + 1
-----CUUUU--GCAGGCACUUCCUACAAUGUCCUUGUCAGUGCCGUGAACAACACACGCUGUCCGGAUGCCCCCUGCAGCGAGUACGGCAUCAAGGAGAAGC------CA
-----.....--...(((.....(......)((((((...(((((((.......((.((((((..((.....))..)))))).)))))))))))))))...))------). ( -31.81)
>consensus
_____UUCUU__ACAGGCACUUCCUACAAUGUCCUUGUCAGUGCUGUGAACAACACACGCUGUCCGGAUGCCCCCUGCAGCGAGUACGGCAUCAAAGAGAAGC______CA
...............((((((....((((.....)))).))))))(((.....))).((((((..((.....))..))))))............................. (-15.70 = -16.23 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:51 2006