Locus 1254

Sequence ID 2L_DroMel_CAF1
Location 3,312,658 – 3,312,778
Length 120
Max. P 0.839752
window2051

overview

Window 1

Location 3,312,658 – 3,312,778
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.42
Mean single sequence MFE -30.86
Consensus MFE -26.54
Energy contribution -26.62
Covariance contribution 0.08
Combinations/Pair 1.15
Mean z-score -1.48
Structure conservation index 0.86
SVM decision value 0.75
SVM RNA-class probability 0.839752
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3312658 120 + 22407834
AUUGAUAAGAAAGUGGGUGCACGUGCUCCCUUAACGUGCAAUCACCUGAAGAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUUUUCUGAGUGCCGCCGACUAUUUUAAGCAUUAUUCU
.....(((((.(((.(((((((((.........))))))...((((.((((((((...((.....))((((.....)))))))))))).).)))..))).))).)))))........... ( -33.20)
>DroSec_CAF1 21657 120 + 1
AUUGAUAAGGAAGUGGGUGCACGUGCUCCCUUAACGUCCAAUCACCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUUUUCUAAGUGCCGUCGACUAUUUUCAGCAUUAUUCU
...(((..(((.(((((.((....)).)))...)).)))....((((....)))))))......(((((..((((..((..((((....))).)..))..))))....)))))....... ( -28.30)
>DroSim_CAF1 21610 120 + 1
AUUGAUAAGAAAGUGGGUGCACGUGCUCCCUUAACGUGCAAUCACCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUUUUCUGAGUGCCGUCGACUAUUUUCAGCAUUAUUCU
.......(((((((((.(((((((.........)))))))...((((....)))).)))))))))((((..((((..((..((((....))).)..))..))))....))))........ ( -33.10)
>DroEre_CAF1 29833 120 + 1
AUUGAUAAGAAAGUGGGUGCACGUGCUCCGUUAACGUGCAAUCACCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUAUUUUGAGUGCAGUCGACUAUUUUGAGCACUAUUCU
.........(((((((((((((((.........))))))....((((....)))).......((((((....))))))..))))))))).(((((..((((.....)))))))))..... ( -31.90)
>DroYak_CAF1 21835 120 + 1
AUUGAUAAGACAGUGGGUGCACGUGCUCCGUUAACGUGCAAUCAUCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUCUUCUGAGUGCAGUCGACUACUUUAAGCAUUAUUCU
..........(((((..(((((((.........)))))))..)).)))((((((.....))))))(((...((((..((..((((....))).)..))..)))).....)))........ ( -27.80)
>consensus
AUUGAUAAGAAAGUGGGUGCACGUGCUCCCUUAACGUGCAAUCACCUGAAAAGGUAUCGCUUUUUGCUGUUUAGUAAACAACCUUUUCUGAGUGCCGUCGACUAUUUUAAGCAUUAUUCU
.......((((.(((..(((((((.........)))))))..)))..((((((((...((.....))((((.....))))))))))))..(((((...............))))).)))) (-26.54 = -26.62 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:50 2006