Locus 1251

Sequence ID 2L_DroMel_CAF1
Location 3,308,924 – 3,309,016
Length 92
Max. P 0.532427
window2047

overview

Window 7

Location 3,308,924 – 3,309,016
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 86.28
Mean single sequence MFE -24.26
Consensus MFE -17.10
Energy contribution -19.42
Covariance contribution 2.32
Combinations/Pair 1.12
Mean z-score -1.65
Structure conservation index 0.70
SVM decision value -0.00
SVM RNA-class probability 0.532427
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3308924 92 + 22407834
---AUCGUGAACUUGGGAUACAAACAGAAGGGCGAACAGACGCCAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG
---.((((((((((((.(((((..(((...((((......))))....((((.(....))))).))).))))).)))))).))))))........ ( -30.60)
>DroSec_CAF1 17846 91 + 1
---AUCGUGAACUUGGGAUACAAACAGAAGGGCAGACAGACGCCAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAG-AUUACGGAGCAACAG
---.((((((.(((((.(((((..(((...(((........)))....((((.(....))))).))).))))).)))))-.))))))........ ( -28.00)
>DroSim_CAF1 17738 92 + 1
---AUCGUGAACUUGGGAUACAAACAGAAGGGCAAACAGACGCCAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG
---.((((((((((((.(((((..(((...(((........)))....((((.(....))))).))).))))).)))))).))))))........ ( -28.40)
>DroEre_CAF1 26064 94 + 1
CAAAUUGUGAACUUCGGAUA-AAAGAGUGGGGCAAACAGACGCGAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG
.....(((...(((((((((-......(((.(((..(((.(((...)))....(....).....)))...))).)))..)))).)))))..))). ( -20.40)
>DroYak_CAF1 18041 82 + 1
AAAGUCGUAAAC-------------AGAGGAGCAAAUAGACGCCAGGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG
....((((((((-------------...((.(((..(((.(((...)))....(....).....)))...))).))..)).))))))........ ( -13.90)
>consensus
___AUCGUGAACUUGGGAUACAAACAGAAGGGCAAACAGACGCCAAGCGAAUCCGGAAGAUUUACUGAUGUGUGCCGAGUAUUACGGAGCAACAG
....((((((((((((.(((((........(((........))).((..(((.(....))))..))..))))).)))))).))))))........ (-17.10 = -19.42 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:46 2006