| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,307,159 – 3,307,255 |
| Length | 96 |
| Max. P | 0.620414 |
| Location | 3,307,159 – 3,307,255 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.92 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -12.77 |
| Energy contribution | -13.41 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3307159 96 - 22407834 UACACACAGCUUUCGA----CGGCCGCAGGCCA-AAAACUAAAA--AUUUGUCUGUUGCCGAGGCCAAAGUGUGCA--CAUAUGACAGUAGU------AGCGCCU-------UGCAA--A ........((......----((((.((((((.(-((........--.))))))))).))))......(((.(((((--(.(((....)))))------.))))))-------)))..--. ( -23.20) >DroSec_CAF1 16005 95 - 1 UACACACAGCUUUCGA----CGGCCACAGGCCA-AAAACUAAAA---UUUGUCUGUUGCCGAGGCCACAGUGUGCA--CAUAUGACAGUAUU------AGCGCCU-------UGCAA--A ........((((....----((((.((((((.(-((........---))))))))).))))))))..(((.((((.--.((((....)))).------.)))).)-------))...--. ( -22.40) >DroSim_CAF1 15922 96 - 1 UACACACAGCUUUCGA----CGGCCGCAGGCCA-AAAACUAAAA--AAUGGUCUGUUGCCGAGGCCACAGUGUGUA--CAUAUGACAGUAUU------AGCGCCU-------UGCAA--A (((((((.((((....----((((.((((((((-..........--..)))))))).))))))))....)))))))--..............------.((....-------.))..--. ( -29.30) >DroEre_CAF1 24056 95 - 1 AACGCACAGCUUUCAG----CGGCCGCA-GCCA-UAAACUAAAA--AUUUGUCUGUUGCUGAGGCCAAAGUGUGCA--CCUAUGACAAUAAU------AGCGUCU-------UUCAA--C ...(((((((.....)----)((((.((-((.(-((.((.....--....)).))).)))).))))....)))))(--(((((.......))------)).))..-------.....--. ( -27.80) >DroYak_CAF1 16223 101 - 1 UGCACACAGCUUUCAGCUUGCGGCCGCAAGCCAAAAAACUAAAA--AUUUGCCUGUUGCCGAGGCGAAAGUGUGCA--CAUAUGACAAUAUA------AGCGCUU-------UUCAA--A (((((((........((((((....)))))).............--.(((((((.......))))))).)))))))--..............------.......-------.....--. ( -28.50) >DroAna_CAF1 25825 116 - 1 AACACACAGCCUUUGGG-CGAAGCCGAGGGCCA-ACG--UGAAAUGCUGUGACUGCUGUCGGGCCCAAAUGCUCCAAUCAUGUGAAAGUGAUAAAUUAAGCGUUUGUGGCUAUUCAACAA ..(((...((((((((.-.....))))))))..-..)--))......((((((....))).((((((((((((...(((((......)))))......)))))))).)))).....))). ( -36.10) >consensus UACACACAGCUUUCGA____CGGCCGCAGGCCA_AAAACUAAAA__AUUUGUCUGUUGCCGAGGCCAAAGUGUGCA__CAUAUGACAGUAUU______AGCGCCU_______UGCAA__A ..(((((.((((........((((.((((((...................)))))).))))))))....))))).............................................. (-12.77 = -13.41 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:45 2006