| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,289,245 – 3,289,361 |
| Length | 116 |
| Max. P | 0.622004 |
| Location | 3,289,245 – 3,289,361 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.84 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -13.00 |
| Energy contribution | -14.78 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3289245 116 + 22407834 GAAAAAUCCUUUCAUUUUG-AAUGGGCUGUUAGCUUUGAGCAUAGUUUUCAGUUCUGAAUAAAUUCAGACUUUCCUAGCUGG---AUAAGCUCUACAAUUUUCAAAGCAAAAGCAGUCCU ((((.....))))......-...((((((((.((((((((.((((((((((((((((((....))))))........)))))---)..)))).....)).))))))))...)))))))). ( -29.80) >DroSim_CAF1 13617 100 + 1 GAAAAAUCCUUUCAUUUUG-AAAGGGCUGUUAGCUUUGAGCAUAGUUUUCAGUUCUGAAUAAAUUCA-------------------UAAGCUCUACAAUUUUCAAAGCAAAAGCAGUCCU ((((.....))))......-..(((((((((.((((((((.((.((....((((.((((....))))-------------------..))))..)).)).))))))))...))))))))) ( -24.40) >DroYak_CAF1 13317 118 + 1 G-AAAAUCCUUUCAUUUUAAAAAGGGCUGUAAGUUUUGGGCUGAGUUUUUCGUUCUGAAUUAAUUUAGCAUUUAAUAGCCAGCUUACAAGCCCUACAAC-UUCAAAGAAAAAUCAGUAUU (-(((....)))).........((((((((((((..(((((((((((.(((.....)))..)))))))).........))))))))).)))))).....-.................... ( -26.40) >consensus GAAAAAUCCUUUCAUUUUG_AAAGGGCUGUUAGCUUUGAGCAUAGUUUUCAGUUCUGAAUAAAUUCAG__UUU__UAGC__G___AUAAGCUCUACAAUUUUCAAAGCAAAAGCAGUCCU .......................((((((((.((((((((.((.((....(((((((((....)))))....................))))..)).)).))))))))...)))))))). (-13.00 = -14.78 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:33 2006