Locus 1242

Sequence ID 2L_DroMel_CAF1
Location 3,289,063 – 3,289,165
Length 102
Max. P 0.624530
window2033

overview

Window 3

Location 3,289,063 – 3,289,165
Length 102
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 94.81
Mean single sequence MFE -20.97
Consensus MFE -18.88
Energy contribution -19.12
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.90
SVM decision value 0.19
SVM RNA-class probability 0.624530
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3289063 102 + 22407834
AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUGGCGGCCAUAAUGUUUGCAUGCCAG--------
....................(((((.(......((((((..(((((.....)))))...(.(((((........))))))...)))))).....).))))).-------- ( -21.20)
>DroSec_CAF1 13044 102 + 1
AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUGGCGGCCAUAAUGUUUGCAUGCCAG--------
....................(((((.(......((((((..(((((.....)))))...(.(((((........))))))...)))))).....).))))).-------- ( -21.20)
>DroSim_CAF1 13436 102 + 1
AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUGGCGGCCAUAAUGUUUGCAUGCCAG--------
....................(((((.(......((((((..(((((.....)))))...(.(((((........))))))...)))))).....).))))).-------- ( -21.20)
>DroYak_CAF1 13141 107 + 1
AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUG---GCCAUAAUGUUUGCAUGCCAGAAACGCAG
....................(((((.(......((((((..(((((.....)))))...(.(((((........))))---)))))))).....).)))))......... ( -20.30)
>consensus
AACAAUUAAAAUUUCAUUAAUGGCGAGAAAUAAAUUAUGAAGUGCACAAAAUGCGCAUAGUCCAUUAAUAAUCCGAUGGCGGCCAUAAUGUUUGCAUGCCAG________
....................(((((.(......((((((..(((((.....))))).....(((((........)))))....)))))).....).)))))......... (-18.88 = -19.12 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:32 2006