Locus 124

Sequence ID 2L_DroMel_CAF1
Location 382,032 – 382,147
Length 115
Max. P 0.583814
window190

overview

Window 0

Location 382,032 – 382,147
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.64
Mean single sequence MFE -40.40
Consensus MFE -31.57
Energy contribution -31.57
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.78
SVM decision value 0.10
SVM RNA-class probability 0.583814
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 382032 115 + 22407834
ACUGAGAUUUGGAAUGGGACUUGGUCUGCCUUUG-----ACUUUGACUGGCGCUUGGCCUGAUUAGCAUGCAGGGCCUAAGAGGGCCAAGACGCCGAGUAGUUGUGUCAAAAUGUUAGCC
.((((.((((((....((((...)))).))..((-----((....(((((((((((((((..(((((.......).))))..)))))))).)))).)))......)))))))).)))).. ( -39.30)
>DroSec_CAF1 49686 98 + 1
--------------UGGGACUUGGUCUGCC---G-----AGUUUGACUGGCGCUUGGCCUGAUUAGCAUGCAGGGCCUAAGAGGGCCAAGACGCCGAGAAGUUGUGUCAAAAUGUUAGCC
--------------..((((((((....))---)-----)))))((((((((((((((((..(((((.......).))))..)))))))).))))).........)))............ ( -36.50)
>DroSim_CAF1 50356 112 + 1
ACUGAGAUUCGGAAUGGGACUUGGUCUGCC---G-----AGUUUGACUGGCGCUUGGCCUGAUUAGCAUGCAGGGCCUAAGAGGGCCAAGACGCCGAGUAGUUGUGUCAAAAUGUUAGCC
.((((.(((..((...((((((((....))---)-----))))).(((((((((((((((..(((((.......).))))..)))))))).)))).))).......))..))).)))).. ( -42.70)
>DroYak_CAF1 50925 117 + 1
ACUGCGAUUCGGAAUGGGACUUGGUCGGCU---GGCCAAGGUUUGACUGGCGCUUGGCCUGAUUAGCAUGCUGGGCCUAAGAGGGCCAAGACGCCGAGCGGUUGUGUCAAAAUGUUAGCC
(((((...(((((......(((((((....---))))))).))))).(((((((((((((..(((((.......).))))..)))))))).))))).))))).................. ( -43.10)
>consensus
ACUGAGAUUCGGAAUGGGACUUGGUCUGCC___G_____AGUUUGACUGGCGCUUGGCCUGAUUAGCAUGCAGGGCCUAAGAGGGCCAAGACGCCGAGUAGUUGUGUCAAAAUGUUAGCC
..............(((.((..((((..................))))((((((((((((..(((((.......).))))..)))))))).))))........)).)))........... (-31.57 = -31.57 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:35 2006