Locus 1238

Sequence ID 2L_DroMel_CAF1
Location 3,287,477 – 3,287,569
Length 92
Max. P 0.999584
window2028

overview

Window 8

Location 3,287,477 – 3,287,569
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 94.13
Mean single sequence MFE -24.76
Consensus MFE -23.22
Energy contribution -22.86
Covariance contribution -0.36
Combinations/Pair 1.11
Mean z-score -2.19
Structure conservation index 0.94
SVM decision value 3.75
SVM RNA-class probability 0.999584
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3287477 92 - 22407834
CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCUCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG
..((((.......((((.....((((.((((((..((....))..)))))))))).)))).((((((((....))))..))))))))..... ( -23.60)
>DroSec_CAF1 11502 92 - 1
CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCUCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG
..((((.......((((.....((((.((((((..((....))..)))))))))).)))).((((((((....))))..))))))))..... ( -23.60)
>DroSim_CAF1 11886 92 - 1
CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCUCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG
..((((.......((((.....((((.((((((..((....))..)))))))))).)))).((((((((....))))..))))))))..... ( -23.60)
>DroYak_CAF1 11544 92 - 1
CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCCCCUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG
..............((((((((((((.((((.....))))))))))))...))))...(((.(((((((....))))..))))))....... ( -28.00)
>DroAna_CAF1 25657 91 - 1
CUUUCUCUAAAAAGGGCAAAAAGGCCAUAA-ACCUCUUUAUGCCCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGACUCAUA
.......(((((.(((((.(((((......-...))))).))))).)))))..(((((....(.(((((....)))))).)))))....... ( -25.00)
>consensus
CAUUCUCUAAAAAGGGCAAAGGGGUAAUAAAAUCUGUUUAUGCUCGUUUUAUGCCAGCCCAAGCUGCGAAAUAUCGCACAGCUGGAACCAUG
.......(((((.(((((((.((((......)))).))..))))).)))))..(((((....(.(((((....)))))).)))))....... (-23.22 = -22.86 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:27 2006