Locus 1237

Sequence ID	2L_DroMel_CAF1
Location	3,282,686 – 3,282,801
Length	115
Max. P	0.653351

overview

Window 7

Location	3,282,686 – 3,282,801
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	91.74
Mean single sequence MFE	-29.12
Consensus MFE	-23.01
Energy contribution	-24.07
Covariance contribution	1.06
Combinations/Pair	1.03
Mean z-score	-1.73
Structure conservation index	0.79
SVM decision value	0.25
SVM RNA-class probability	0.653351
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3282686 115 - 22407834
CCAAAUUGAAUUACACGAAAUAGGCUUAUGUCUGCCAGAAAUGAAAGGUAAACUCAAUUCUCUGGCAGUGGCUUGCAAUUUUGGCAACAAAAGAGAGCCAAAUGUGGGGAAAAUG
.............((((..............(((((((((((...((.....))..))).))))))))((((((....(((((....)))))..))))))..))))......... ( -31.70)
>DroSec_CAF1 6725 115 - 1
CCAAAUUGAAUUACACGAAAUAGGCUUAUGUCUGCCAGAAAUGAAAGGUAAACUCAAUUCUCUGGCAGUGGCUUGCAAUUUUGGCAACAAAAGGGAACAAAAUGUGGGGAAGGUG
((...........(((.....((((....))))(((((((((...((.....))..))).)))))).))).((..((.(((((....)))))(....)....))..))...)).. ( -28.40)
>DroSim_CAF1 6509 115 - 1
CCAAAUUGAAUUACACGAAAUAGGCUUAUGUCUGCCAGAAAUGAAAGGUAAACUCAAUUCUCUGGCAGUGGCUUGCAAUUUUGGCAACAAAAGGGAACAAAACGUGGGGAAGGUG
.............((((...((((((.....(((((((((((...((.....))..))).)))))))).))))))(..(((((....)))))..).......))))......... ( -30.20)
>DroYak_CAF1 6800 113 - 1
CCAGAUUAAAUUACACGAAAUAGGCUUAUGUCUGCGCAAAAUGAAAGGUAAACUCAAUUCUCUGGCAAUGGCUUGCAA-UUUGGCAACAAAUGGGAGUCGAUUGUGGGG-AGAUG
....................(((((....)))))......................(((..((.((((((((((.((.-((((....)))))).))))).))))).)).-.))). ( -26.20)
>consensus
CCAAAUUGAAUUACACGAAAUAGGCUUAUGUCUGCCAGAAAUGAAAGGUAAACUCAAUUCUCUGGCAGUGGCUUGCAAUUUUGGCAACAAAAGGGAACAAAAUGUGGGGAAGAUG
.............((((...((((((.....(((((((((((...((.....))..))).)))))))).))))))(..(((((....)))))..).......))))......... (-23.01 = -24.07 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:26 2006