Locus 1235

Sequence ID 2L_DroMel_CAF1
Location 3,273,500 – 3,273,620
Length 120
Max. P 0.633487
window2025

overview

Window 5

Location 3,273,500 – 3,273,620
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.41
Mean single sequence MFE -26.21
Consensus MFE -22.06
Energy contribution -21.82
Covariance contribution -0.24
Combinations/Pair 1.15
Mean z-score -1.34
Structure conservation index 0.84
SVM decision value 0.21
SVM RNA-class probability 0.633487
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3273500 120 + 22407834
GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUGCGUAUAUGCGCAAGUUUUCAUCAGCUUUUAGCUGGCAAGCUGCAACUUUA
.......(((((((((((((((((......((((....((....)).))))......)))))......(((((....))))).........((((.....)))))).))))))))))... ( -29.40)
>DroSec_CAF1 100394 117 + 1
GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGUCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUUCACUGCGUAUAUG--CAAGUUUUCAUCAGCUUUUAGCUGGCAAG-UGUACCUUUA
(((((.((..((((((...(((((........(((....))).(((........))))))))....))))))....))--.)))))....(((((.....)))))....-.......... ( -20.30)
>DroSim_CAF1 103775 118 + 1
GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUGCGUAUAUG--CAAGUUUUCAUCAGCUUUUAGCUGGCGAGCUGCAACUUUA
.......((((((((((((..........(((((.....(....)(((((.....((......))...)))))....)--)))).......((((.....)))))).))))))))))... ( -26.30)
>DroEre_CAF1 98473 120 + 1
GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUCCGUGUAUCCGCAAGUUUCCAUCAGCUUUCAGCUGGCAAGCUGCAACUUUG
.......((((((((((((..........(((((.(((((........)))))..((((.((.........)).)))).))))).......((((.....)))))).))))))))))... ( -27.20)
>DroYak_CAF1 97007 120 + 1
GGCUUUUGGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUUCGUAUAUCCGCAAGAUUUCAUCAGCUUUCAGCUGGCAAGCUGCAACUUUA
.......((((((((..............(((((((.((((....(((.(((((((...(((.............)))..))))))).)))......)))).)))))))))))))))... ( -27.85)
>consensus
GGCUUUCAGUUGCAGUUGUAUCUAAAUUUCUUGCCAAUUGAUUUCAUGCAAUUUUGAUAGAUUUCCACUGCGUAUAUGCGCAAGUUUUCAUCAGCUUUUAGCUGGCAAGCUGCAACUUUA
.......(((((((((((((((((......((((....((....)).))))......))))).............................((((.....)))))))).))))))))... (-22.06 = -21.82 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:24 2006