| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,269,082 – 3,269,178 |
| Length | 96 |
| Max. P | 0.731997 |
| Location | 3,269,082 – 3,269,178 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 77.41 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | -9.88 |
| Energy contribution | -9.48 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3269082 96 + 22407834 --G---UGUGGAAACAGAUAGAA------GCCAACGUGGGUGGGCAUAAAAACAGCAUUAGCUAAAGGGUUCUUCCAAAAAUUGUUGGCCAUGUGGGUAAACAAGAA --(---(.((....)).))....------(((.((((((.(.((((.......(((....)))...(((....)))......)))).))))))).)))......... ( -23.50) >DroSec_CAF1 95902 88 + 1 AUG---GGGGGAAACAGAUAGAA------GCCAACGUGGGUGGGCAUAAGAACCGCAUUAGC----------UCCCAAAAAUUGUUGGCCAUGUGGGUAAACAAGAA .((---((((.............------.((.....))((((.........)))).....)----------)))))....(((((.(((.....))).)))))... ( -22.30) >DroSim_CAF1 99358 88 + 1 AUG---GGGGGAAACAGAUAGAA------GCCAACGUGGGUGGGCAUAAAAACCGCAUUAGC----------UCCCAAAAAUUGUUGGCCAUGUGGGUAAACAAGAA .((---((((.............------.((.....))((((.........)))).....)----------)))))....(((((.(((.....))).)))))... ( -22.30) >DroEre_CAF1 94039 103 + 1 AUGAGUGGGGCAACCAGAUAGAACAGCCCACCCACUUU---GGGCAUAAAAACAGCAUUAGCAGAAGGGUUC-UCCAAAAAUUGUUGGCCAUGUGGGCAAACAAGAA .....(((((.((((..........(((((.......)---)))).........((....)).....)))))-))))....(((((.(((.....))).)))))... ( -29.20) >DroYak_CAF1 92431 92 + 1 -----------AACCAGAUAGAACAGCGCACCCACUUG---GGGCAUAAAAACAGCAUUAGCUGAAGGGUUC-UCCAAAAAUUGUUGGCCAUGUGGGUAAACAAGAA -----------........(((((...((.(((....)---)))).......((((....))))....))))-).......(((((.(((.....))).)))))... ( -23.90) >consensus AUG___GGGGGAAACAGAUAGAA______GCCAACGUGGGUGGGCAUAAAAACAGCAUUAGC__AAGGGUUCUUCCAAAAAUUGUUGGCCAUGUGGGUAAACAAGAA .........................................(((..........((....))...........))).....(((((.(((.....))).)))))... ( -9.88 = -9.48 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:20 2006