Locus 123

Sequence ID 2L_DroMel_CAF1
Location 381,813 – 381,933
Length 120
Max. P 0.714799
window189

overview

Window 9

Location 381,813 – 381,933
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.13
Mean single sequence MFE -33.77
Consensus MFE -24.49
Energy contribution -25.68
Covariance contribution 1.19
Combinations/Pair 1.15
Mean z-score -2.06
Structure conservation index 0.73
SVM decision value 0.38
SVM RNA-class probability 0.714799
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 381813 120 - 22407834
AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCACAGUCAUAAAGCCACUGGAAAAAAAGUUGCGCCCUAUUGGAGCUAUUUCACUCGUAGCUAAUAAACUUAUCCU
.....((((.(((((.((((.(((((((((((((....)))))).)))))))))))..((...)).......)))))..((....))((((((.......))))))......)))).... ( -34.20)
>DroSec_CAF1 49494 116 - 1
AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCACAGUCAUAAAGACACUGGGAAAAAAGUUGAGGCCUAUUGGGGCUACUUCAC-CGUAGCUA---AACUUAUCCU
................((((.(((((((((((((....)))))).))))))))))).......((((...(((((....((....))((((((.....-.)))))).---))))).)))) ( -34.40)
>DroSim_CAF1 50138 119 - 1
AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCACACUCAUAAAGACACUGGGAAAAAAGUUGCGGCCUAUUGGGGCUACUUCAC-CGUAGCUAAUAAACUUAUCCU
.....((((.....(...((((((((((((((((....)))))).))).((((.........))))...........)))))))..)((((((.....-.))))))......)))).... ( -32.00)
>DroYak_CAF1 50688 117 - 1
AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCGCCGUCAUAAAGUCACUGGAAAAAAAGUCGUGGCUUAAUGAGGC---UUCACUCGUAGCUAAUAAAUGUAUCCU
(((((((..(((.((...((((((((((((((((....)))))).)))..((((.(((((((.((........))))))))).)))))))---)).))..)).)))..)))))))..... ( -34.50)
>consensus
AUAUUUAAGAGCAACAUUGUAGGCUGUGUGGGUUUCCUAGCCCAGCACAGUCAUAAAGACACUGGAAAAAAAGUUGCGGCCUAUUGGGGCUACUUCAC_CGUAGCUAAUAAACUUAUCCU
.....((((.(((((.((((.(((((((((((((....)))))).)))))))))))...(....).......)))))..........((((((.......))))))......)))).... (-24.49 = -25.68 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:34 2006