| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,268,201 – 3,268,297 |
| Length | 96 |
| Max. P | 0.663092 |
| Location | 3,268,201 – 3,268,297 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.86 |
| Mean single sequence MFE | -19.58 |
| Consensus MFE | -9.34 |
| Energy contribution | -9.98 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3268201 96 - 22407834 -AAAACCGUACACAAUAUUGUGUAAACAUGGCUUGCUCAAAGCCAAAAAUGA-----UUU--------GAAUAUGGCUACUUAGAUGA-AAAAGUACGUGAAAUAAAAUUG--------- -.......((((((....))))))....((((((.....)))))).....((-----(((--------..((.(.(((((((......-..))))).)).).)).))))).--------- ( -17.40) >DroSec_CAF1 95034 98 - 1 -AAAC-CGUACACAAUAUUGUGUAAACAUGGCUUGCUCCAAGCCAAAAAUGGCAUGUUUC--------GAA--UGGCUACUUAAAUGA-AAAAGUACACGGAAUAAAAUUG--------- -...(-((((((((....))))).....(((((((...)))))))...))))..((((((--------(..--..(.(((((......-..)))))).)))))))......--------- ( -22.10) >DroSim_CAF1 98491 99 - 1 -AAACCCGUACACAAUAUUGUGUAAACAUGGCUUGCUCAAAGCCAAAAAUGGCAUGUUUC--------GAA--UAGCUACUUAAAUGA-AAAAGUACACGGAAUGAAAUUG--------- -....(((((((((....)))))..((.((((((.....))))))....((((.(((...--------..)--)))))).........-....))..))))..........--------- ( -19.30) >DroEre_CAF1 93158 117 - 1 -AAAACCGUAUACAAUAUUGUGUAAACAUGGCUUACUCAAAGCCGAAAAUAGUACGAUUUAUGUGGGGAAA--UGGCUACUUAGAUGGAAAGGCUACAAAAAGUAGAAAUUCAAAAAUGU -.......((((((....)))))).(((((((((.....)))))(((.......(.(((((.((((.....--...)))).))))).).....((((.....))))...)))....)))) ( -21.60) >DroYak_CAF1 91567 100 - 1 CAAAACUGUACACAAUAUUGUGUAAACAUGGCUUACUAUA-----AAAAUAGUACGAUUAAAGUUGGGAAA--UGGCUACUUAGA----AAAAGUACAUGGAAUAAAAGUG--------- ....(((.((((((....))))))..(((((((((((((.-----...))))))((((....)))).....--.)))(((((...----..))))))))).......))).--------- ( -17.50) >consensus _AAAACCGUACACAAUAUUGUGUAAACAUGGCUUGCUCAAAGCCAAAAAUGGCACGAUUC________GAA__UGGCUACUUAGAUGA_AAAAGUACACGGAAUAAAAUUG_________ ........((((((....))))))....((((((.....))))))....((((....(((........)))....))))......................................... ( -9.34 = -9.98 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:16 2006