Locus 1228

Sequence ID 2L_DroMel_CAF1
Location 3,266,067 – 3,266,166
Length 99
Max. P 0.994265
window2016

overview

Window 6

Location 3,266,067 – 3,266,166
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 76.80
Mean single sequence MFE -23.48
Consensus MFE -16.25
Energy contribution -16.75
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.69
SVM decision value 2.46
SVM RNA-class probability 0.994265
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3266067 99 + 22407834
AUCAGCGACUAAGUGCAUAAGUGUGUUGUGUGCUGAAAUGUGUCACUACGCACAUAUAUGUAAGCCGACAUAUAGCCAAGUGUAUAUGUGUAUAUAUGU
.((((((....((..((....))..))...)))))).(((((((((((..(((.(((((((......))))))).....)))..)).))).)))))).. ( -26.50)
>DroSec_CAF1 92715 77 + 1
AUCAGCGACUAAGUGCAUAAGUGUGUUGUGUGCUGAAAUGUGUCACUACUCACAUAUAUG----------------------UAUAUAUGUAUAUAUGG
.((((((....((..((....))..))...)))))).(((((........)))))(((((----------------------(((....)))))))).. ( -19.10)
>DroEre_CAF1 89443 92 + 1
AUCAGCGCCUAAGUGCAUAAGUGUGUUGUGUGCUGAAAUGUGUCGCUUCGCACAUAUAAA-----CUACAUAUAUCUGAG--UAUAUAUACAUAUAUGG
.(((((((...((..((....))..))..))))))).((((((......)))))).....-----...(((((((....(--((....)))))))))). ( -22.90)
>DroYak_CAF1 89113 82 + 1
AUCAGCGCCUAAGUGCACAAGUGUGUUGUGUGCUGAAAUGUGUCACUUCGCACAUAUAAA-----CUAUAUAUA----AG--UAUA------UGUAUGG
.(((((((...((..((....))..))..))))))).((((((......)))))).....-----(((((((((----..--..))------))))))) ( -25.40)
>consensus
AUCAGCGACUAAGUGCAUAAGUGUGUUGUGUGCUGAAAUGUGUCACUACGCACAUAUAAA_____CUACAUAUA____AG__UAUAUAUGUAUAUAUGG
.(((((((...((..((....))..))..))))))).(((((........)))))............................................ (-16.25 = -16.75 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:15 2006