Locus 1224

Sequence ID 2L_DroMel_CAF1
Location 3,264,339 – 3,264,446
Length 107
Max. P 0.634051
window2005

overview

Window 5

Location 3,264,339 – 3,264,446
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 87.43
Mean single sequence MFE -30.44
Consensus MFE -22.86
Energy contribution -23.70
Covariance contribution 0.84
Combinations/Pair 1.22
Mean z-score -1.67
Structure conservation index 0.75
SVM decision value 0.21
SVM RNA-class probability 0.634051
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3264339 107 - 22407834
GGAAAAGUCGAAAAGGUGGCUGCAAACUGAAGGCGAAAGUGCUUAAAUAAAGCUGUUUUUGUUGCGUUCGCU-UUGCGAGUAUCUCAGCCAUCUUUGGUAUUUUGGUU
...(((((...(((((((((((((((.((((.((((....((((.....))))........)))).)))).)-))))(((...)))))))))))))...))))).... ( -33.20)
>DroSec_CAF1 90975 107 - 1
GGAAAAGUCGAAAAGGUGGCUACAAACUGGAGGCGAAAGUGCUUAAAUAAAGCUGUAUUUGUUGCGUUCGCU-UGGCGAGUAUUUGAGCCAUCUUUUGUAUUUUGGCU
.....((((((((((((((((.((((((.(.((((((...((.((((((......))))))..)).))))))-...).)))..)))))))))))......)))))))) ( -32.10)
>DroSim_CAF1 94058 104 - 1
GGAAAAGUCGGAAAGGUGGUUGCAAACUGGAGGCGAAAGUGCU-AAAUAAAGCUGU-UUUGUUGCGUUCGCU-UGGCGAGUAUUUGAGCCAUCU-UUGUGUUUUGGCU
((..(((.((.((((((((((.((((((.(.((((((...((.-(((((....)))-)).))....))))))-...).)))..)))))))))))-)).)).)))..)) ( -29.60)
>DroEre_CAF1 87859 107 - 1
GGAAAAGUCGAAAAGGUGGCUGAAAACUGAAGGCAAAAGUGCUCAAAUAAAGCUGUUUUUGUUGCGUUCGCA-UUGCGAGUAUCUCAGCCAACUUUUGCUUUUUAGCU
.(((((((..(((((.(((((((........(((((((..(((.......)))...)))))))...(((((.-..)))))....))))))).)))))))))))).... ( -29.50)
>DroYak_CAF1 87352 108 - 1
GGAAAAGACGAAAAGGUGGCUCCGAACUGAAGGCAAAAGUGCUUAAAUAAAGCCGUUUUUGUUGCGCUCGCUUUUGCGAGUAUCUCUGUCAACUUUUGCUUUUUGGCA
.((((((.(.(((((.((((...((......(((((((..((((.....))))...)))))))..((((((....)))))).))...)))).)))))))))))).... ( -27.80)
>consensus
GGAAAAGUCGAAAAGGUGGCUGCAAACUGAAGGCGAAAGUGCUUAAAUAAAGCUGUUUUUGUUGCGUUCGCU_UUGCGAGUAUCUCAGCCAUCUUUUGUAUUUUGGCU
...(((((..(((((((((((..........(((((((..((((.....))))...)))))))...(((((....)))))......)))))))))))..))))).... (-22.86 = -23.70 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:05 2006