Locus 1222

Sequence ID 2L_DroMel_CAF1
Location 3,261,985 – 3,262,081
Length 96
Max. P 0.631340
window2003

overview

Window 3

Location 3,261,985 – 3,262,081
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.79
Mean single sequence MFE -37.52
Consensus MFE -24.61
Energy contribution -26.75
Covariance contribution 2.14
Combinations/Pair 1.08
Mean z-score -1.74
Structure conservation index 0.66
SVM decision value 0.20
SVM RNA-class probability 0.631340
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3261985 96 - 22407834
CAGCGUAAUUGACAUCUGAUUGAAG-AAGCAUCUGGCUGCUUGCCAGGUCC---GC-UACGUGCCACCUGGCUAAUCACACAGCCAGGAACGACAGGUGUA-------------------
...........(((((((.......-.((((((((((.....)))))))..---))-).(((....(((((((........))))))).))).))))))).------------------- ( -36.20)
>DroSec_CAF1 88606 111 - 1
CAGCGUAAUUGACAUCUGAUUGAAG-AAGCAUCUGGCUGCUUGCCAGGUCC---GC-UACGUGCCACCUAGCUAAUCACACAGCCAGGCACGACAGGUGUGGA----UAGAGAUGUGGAG
..((((.(((.(((((((.......-.((((((((((.....)))))))..---))-).((((((.....(((........)))..)))))).))))))).))----)....)))).... ( -37.80)
>DroSim_CAF1 91720 111 - 1
CAGCGUAAUUGACAUCUGAUUGAAG-AAGCAUCUGGCUGCUUGCCAGGUCC---GC-UACGUGCCACCUGGCUAAUCACACAGCCAGGCACGACAGGUGUGGA----UAGAGAUGUGGAG
..((((.(((.(((((((.......-.((((((((((.....)))))))..---))-).((((((...(((((........))))))))))).))))))).))----)....)))).... ( -43.20)
>DroEre_CAF1 85385 111 - 1
CAGCGUAAUUGACAUCUGAUUGAAG-AAGCAUCUGGCUGCUUGCCAGGUCC---GC-UACGUGCCACCUGGCUAAUCACACAGCCCGGCACGACAGGUGUGGA----UGGAGGUGUGUAG
((.(...(((.(((((((.......-.((((((((((.....)))))))..---))-).((((((....((((........)))).)))))).))))))).))----)...).))..... ( -42.50)
>DroWil_CAF1 102351 109 - 1
CAACGUAAUUGACGUUUGAUUGAAGGCAGCAUCUGGCUUUGUGCCAACUCUAGGAC-UACGUGCCUUCAAGCUAAUCACAGUGCU----UCAACCUGUGUGA-----U-GAUUUGCGUUG
((((((((....((((...(((((((((.....((((.....))))......(...-..).)))))))))......(((((.(..----....)))))).))-----)-)..)))))))) ( -30.70)
>DroYak_CAF1 84881 116 - 1
CAGCGUAAUUGACAUCUGAUUGAAG-AAGCAUCUGGCUGCUUGCCAGGUCC---GCAUACGUGCCACCUGGCUAAUCACACAGCCAGCCACGACAGGUGUAGAUAGAUAGAGAUGUGUAG
..((((.(((.(((((((.......-..(((((((((.....)))))))..---))...((((....((((((........)))))).)))).))))))).....)))....)))).... ( -34.70)
>consensus
CAGCGUAAUUGACAUCUGAUUGAAG_AAGCAUCUGGCUGCUUGCCAGGUCC___GC_UACGUGCCACCUGGCUAAUCACACAGCCAGGCACGACAGGUGUGGA____UAGAGAUGUGUAG
...........(((((((............(((((((.....)))))))..........((((((...(((((........))))))))))).))))))).................... (-24.61 = -26.75 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:03 2006