Locus 122

Sequence ID 2L_DroMel_CAF1
Location 381,237 – 381,340
Length 103
Max. P 0.609947
window188

overview

Window 8

Location 381,237 – 381,340
Length 103
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.13
Mean single sequence MFE -34.80
Consensus MFE -26.32
Energy contribution -26.38
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.65
Structure conservation index 0.76
SVM decision value 0.15
SVM RNA-class probability 0.609947
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 381237 103 + 22407834
CCCAUAAAUAAGCAGCCCAGAUACCGGCCAGACUGGG-------GACUGGCUGGAAACUGGAG----------UCUGAUCAAUAAAGUCUGGAGAGUGGAGGAUCGAGACGGAGGCGCAU
...........((.((((((...((((((((......-------..))))))))...)))..(----------(((((((.....(.((....)).)....)))).))))...))))).. ( -34.30)
>DroSec_CAF1 48912 103 + 1
CCCAUAAAUAAGCAGCCCAGAUACCGGCCAGACUGGG-------GACUGGCUGGAAACUGGAG----------UCUGAUCAAUAAAGUCUGGAGAGUGGAGGAUCGAGACGGAGGCGCAU
...........((.((((((...((((((((......-------..))))))))...)))..(----------(((((((.....(.((....)).)....)))).))))...))))).. ( -34.30)
>DroSim_CAF1 49561 103 + 1
CCCAUAAAUAAGCAGCCCAGAUACCGGCCAGACUGGG-------GACUGGCUGGAAACUGGAG----------UCUGAUCAAUAAAGUCUGGAGAGUGGAGGAUCGAGACGGAGGCGCAU
...........((.((((((...((((((((......-------..))))))))...)))..(----------(((((((.....(.((....)).)....)))).))))...))))).. ( -34.30)
>DroYak_CAF1 50072 120 + 1
CCCAUAAAUAAGCAGUCCAGAUACUGGCCAGACUGGGCACUGGGCACUGGCUGGAAACUGGAGUCCGAUCAAGUCUGAUCAAUAAAGUCUGGAGAGUGGAGGAGCGAGACGGAGGAGCAU
.((........((..(((...((((..(((((((((((.((.(((....)))(....).)).))))(((((....))))).....)))))))..))))..)))))........))..... ( -36.29)
>consensus
CCCAUAAAUAAGCAGCCCAGAUACCGGCCAGACUGGG_______GACUGGCUGGAAACUGGAG__________UCUGAUCAAUAAAGUCUGGAGAGUGGAGGAUCGAGACGGAGGCGCAU
...........((...((((...((((((((...............))))))))...)))).........................((((.((..........)).))))......)).. (-26.32 = -26.38 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:33 2006