Locus 1217

Sequence ID 2L_DroMel_CAF1
Location 3,249,905 – 3,249,995
Length 90
Max. P 0.809826
window1992

overview

Window 2

Location 3,249,905 – 3,249,995
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 88.58
Mean single sequence MFE -32.84
Consensus MFE -23.06
Energy contribution -23.14
Covariance contribution 0.08
Combinations/Pair 1.21
Mean z-score -2.40
Structure conservation index 0.70
SVM decision value 0.64
SVM RNA-class probability 0.809826
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3249905 90 - 22407834
UUUCAAUUGUGCCUCGAGCCGUAAGGGGCUAACCCUUGGGCU-UGGAUUUU-CGAGCUGAGCAAAUACUACGGCAUGGCAUUCAUAAUUGUG
...(((((((((((((((((.((((((.....))))))))))-))).....-...((((((......)).))))..)))))....))))).. ( -32.20)
>DroSec_CAF1 84010 90 - 1
UUUCAAUUGUGCCUCGAGCCUUAAGGGGCUAACCCUUGGGCU-UGGGCUUU-CGAGCUGAGCAAAUACUACGGCCUGGCAUCCAUAAUUGUG
...((((((((((.(((((((.(((((.....))))))))))-)))))..(-((.((((((......)).)))).))).....))))))).. ( -33.90)
>DroSim_CAF1 87124 90 - 1
UUUCAAUUGUGCCUCGAGCCUUAAGGGGCUAACCCUUGGGCU-UGGGCUUU-CGAGCUGAGCAAAUACUACGGCCUGGCAUCCAUAAUUGUG
...((((((((((.(((((((.(((((.....))))))))))-)))))..(-((.((((((......)).)))).))).....))))))).. ( -33.90)
>DroEre_CAF1 80769 90 - 1
UUUCAAUUGUGCCUCGGGUUCUGAGGGGAUAGCCCUUGGG-UUGGGGUUUU-CGAGCUGAGCAAAUACUACGGCACGGCAUCCAUAAUUGUG
...((((((((((((((...)))))).((.((((((....-..)))))).)-)..((((.((..........)).))))...)))))))).. ( -29.50)
>DroYak_CAF1 80026 92 - 1
UUUCAAUUGUGCCUCGGCUGCUGAGGGGCUAACCCUUGGGCUUGGGGUUUUGCGAGCUGAGCAAAUACUGGGGCAGGGGAUCCAUAAUUGUG
...((((((((((((.....(..((((.....))))..)((((.((..(((((.......)))))..)).)))).))))...)))))))).. ( -34.70)
>consensus
UUUCAAUUGUGCCUCGAGCCCUAAGGGGCUAACCCUUGGGCU_UGGGUUUU_CGAGCUGAGCAAAUACUACGGCAUGGCAUCCAUAAUUGUG
...((((((((((...(((((.(((((.....))))))))))..))......((.((((((......)).)))).)).....)))))))).. (-23.06 = -23.14 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:52 2006