Locus 1215

Sequence ID	2L_DroMel_CAF1
Location	3,248,305 – 3,248,415
Length	110
Max. P	0.968242

overview

Window 0

Location	3,248,305 – 3,248,415
Length	110
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	84.69
Mean single sequence MFE	-32.02
Consensus MFE	-21.24
Energy contribution	-21.05
Covariance contribution	-0.19
Combinations/Pair	1.04
Mean z-score	-2.98
Structure conservation index	0.66
SVM decision value	1.62
SVM RNA-class probability	0.968242
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3248305 110 - 22407834
AACUUUUCAACUUAUGCGUU-UGCUACUCUGGC--GCAGAAUAUUUU-GGCGAGUAUUCAUUCAGGUUUAUGCCAGCACAGUGGGUGGCUUAUGCAUAUGGCAUAUAUAUAUAC
..........(.(((((((.-.(((((((..(.--((.((((((((.-...)))))))).....(((....))).)).)...)))))))..))))))).).............. ( -32.30)
>DroSim_CAF1 85515 106 - 1
AACUUUUCAACUUAUGCGUU-UGCUACUCUGGC--GCAGAAUAUUUU-GGCGAGUGU----UCAGGUUUAUGCCAGCACAGUGGGUGGCUUAUGCAUAUAGCAUAUAUAUAUAU
............(((((((.-.(((((((..(.--((.((((((((.-...))))))----)).(((....))).)).)...)))))))..)))))))................ ( -31.90)
>DroEre_CAF1 79129 93 - 1
AACUUUUCAACUUAUGCGUU-UGCUACUCUUGCUGGCAGAAUAUUUU--GGGAGUGU----UCAGGUUUAUGCC---ACAGUGGGUGGCUUAUGCAUAUAGU----A-------
.........((((((((((.-.(((((((..((((...((((((((.--..))))))----)).(((....)))---.)))))))))))..))))))).)))----.------- ( -32.80)
>DroYak_CAF1 78390 101 - 1
AACUUUCCAACUUAUGCGUUUUGCUACUCUGGC--GCAGAAUAUUUUUGGGGAGUGU----UCAGGUUUAUGCCAGCACAGUGGGUGGCUUAUGCAUAUACUAUAUA-------
............(((((((...(((((((..(.--((.((((((((.....))))))----)).(((....))).)).)...)))))))..))))))).........------- ( -31.10)
>consensus
AACUUUUCAACUUAUGCGUU_UGCUACUCUGGC__GCAGAAUAUUUU_GGCGAGUGU____UCAGGUUUAUGCCAGCACAGUGGGUGGCUUAUGCAUAUAGCAUAUA_______
............(((((((...(((((((...........((((((.....)))))).......(((....)))........)))))))..)))))))................ (-21.24 = -21.05 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:50 2006