Locus 1213

Sequence ID 2L_DroMel_CAF1
Location 3,247,466 – 3,247,585
Length 119
Max. P 0.820032
window1985

overview

Window 5

Location 3,247,466 – 3,247,585
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.76
Mean single sequence MFE -38.84
Consensus MFE -30.22
Energy contribution -29.14
Covariance contribution -1.08
Combinations/Pair 1.19
Mean z-score -1.90
Structure conservation index 0.78
SVM decision value 0.68
SVM RNA-class probability 0.820032
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3247466 119 + 22407834
CUGCGAUGGCAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGGGCCAAAUUAUAUGCUGACACAGCGGGGAAACACACAGAUUCUACCCCCAUGGGGAAAGCC-CCAUCCGGAAAA
((((((.(....))).((((((..(((((...((((.((((...)))).))))....)))))))))))))))(....).............((..((((((....))-))))..)).... ( -34.80)
>DroSec_CAF1 81534 118 + 1
CUGCGAUGGCAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGAGCCAAAUUAUAUGCUGACACAGCGGGGAAAUACACAGAUUUU-CCCCCAUGGGGAAAGUC-CCAUCCGGAAAA
(((.(((((...(((.((((((..(((((...((((.((((...)))).))))....)))))))))))..)))..........((((((-((((...))))))))))-)))))))).... ( -41.60)
>DroSim_CAF1 84661 118 + 1
CUGCGAUGGCAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGAGCCAAAUUAUAUGCUGACACAGCGGGGAAACACACAGAUUUU-CCCCCAUGGGGAAAGCC-CCAUCCGGAAAA
((((((.(....))).((((((..(((((...((((.((((...)))).))))....)))))))))))))))(....).......((((-((...((((((....))-))))..)))))) ( -38.30)
>DroEre_CAF1 78291 118 + 1
CUGCGAUGGGAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGGGCCAAAUUAUACGCUGACACAGCGGGAAAGCACACAGAUUUC-CCCCCAUGGGGAAAACC-CCAUUCGGAGAG
((.(((((((......((((((.((((......(((((....))))))))).......(((((...)))))....))))))....((((-(((....)))))))..)-))).))).)).. ( -40.30)
>DroYak_CAF1 77547 119 + 1
CUGCGAUGGGAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGGGCCAAAUUAUACGCUGACACAGCGGGAAAGCGCACAGAUUUU-CCGCCAUGGGGAAAACCCCCAUUCGGCAAA
.......(((((.((.(((((..((((......(((((....))))))))).......(((((...))))).......))))))).)))-))(((((((((.....))))))..)))... ( -39.20)
>consensus
CUGCGAUGGCAACUCAUGUGUUAUGGCAUUCUUUUGUCUUGCGACGGGCCAAAUUAUAUGCUGACACAGCGGGGAAACACACAGAUUUU_CCCCCAUGGGGAAAGCC_CCAUCCGGAAAA
(((.(((((.......((((((.((((......(((((....))))))))).......(((((...)))))....)))))).........((((...)))).......)))))))).... (-30.22 = -29.14 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:45 2006