Locus 1204

Sequence ID 2L_DroMel_CAF1
Location 3,242,847 – 3,242,964
Length 117
Max. P 0.959485
window1963

overview

Window 3

Location 3,242,847 – 3,242,964
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.71
Mean single sequence MFE -24.90
Consensus MFE -21.04
Energy contribution -21.04
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.84
SVM decision value 1.50
SVM RNA-class probability 0.959485
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3242847 117 - 22407834
CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACGGG--AACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUGAACGGCAA-CCAUCCAAAGCCGAGCACAACCCCA
(((...((((((.(((....))).)))))).)))...........(((--..((((((....((((.....))))..)))))).((..((((..-.........))))..))....))). ( -25.10)
>DroSec_CAF1 76953 117 - 1
CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACGGG--AACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAACGGCAA-CCAUCCAAAGCCGAGCACAACCCCA
(((...((((((.(((....))).)))))).)))...........(((--...((((....)))).(((.((((.........)))).((((..-.........)))).)))....))). ( -24.90)
>DroSim_CAF1 80108 117 - 1
CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACGGG--AACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAACGGCAA-CCAUCCAAAGCCGAGCACAACCCCA
(((...((((((.(((....))).)))))).)))...........(((--...((((....)))).(((.((((.........)))).((((..-.........)))).)))....))). ( -24.90)
>DroEre_CAF1 73869 116 - 1
CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACAC---AGAACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAGCGGCAA-CCAUCCAAAGCCGAGCACAACCCCA
.((((.((((((.(((....))).))))))...............---.((.((((((....((((.....))))..)))))).))..((((..-.........))))))))........ ( -23.20)
>DroYak_CAF1 72980 120 - 1
CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACUGGAGCACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAACGGCAAGCCACCGAAAGCCGAGCACAACCCCA
(((...((((((.(((....))).)))))).)))............((.(((.((((....)))).)))............(((((...((....))..(....)..))))).....)). ( -26.40)
>consensus
CUGCUAUUUUGUAAUGAAAGCAUAACAAAAACAGAAACGUAACACGGG__AACAGAUGAAAAUCUCUGCAUGAGAAAUGUCUGCUCAACGGCAA_CCAUCCAAAGCCGAGCACAACCCCA
.((((.((((((.(((....))).))))))......................((((((....((((.....))))..)))))).....((((............))))))))........ (-21.04 = -21.04 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:24 2006