Locus 1203

Sequence ID 2L_DroMel_CAF1
Location 3,241,818 – 3,241,928
Length 110
Max. P 0.692961
window1962

overview

Window 2

Location 3,241,818 – 3,241,928
Length 110
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 93.95
Mean single sequence MFE -28.92
Consensus MFE -22.06
Energy contribution -22.30
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.76
SVM decision value 0.33
SVM RNA-class probability 0.692961
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3241818 110 + 22407834
AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCGAGGCCCAGUUGGGAUAA--GCAAACUGGGUCGAGACGAAGGUAAAUAUGUA----GAAAAACGCAUACUAAAUGCACAAAUA
...((((((..........(((..(((....))).(((((((((.......--...))))))))))))((....)).......))----))))...((((.....))))....... ( -30.10)
>DroSec_CAF1 75922 110 + 1
AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCGAGGCCCAGUUGGGAUAA--GCAAACUGGGUCGAGACGAAGGUAAAUAUAUA----GAAACACGCAUACUAAAUGCACAAAUA
...((((((..........(((..(((....))).(((((((((.......--...))))))))))))((....)).......))----))))...((((.....))))....... ( -29.90)
>DroSim_CAF1 77682 110 + 1
AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCGAGGCCCAGUUGGGAUAA--GCAAACUGGGUCGAGACGAAGGUAAAUAUAUA----GAAAAACGCGUACUAAAUGCACAAAUA
...((((((..........(((..(((....))).(((((((((.......--...))))))))))))((....)).......))----))))...((((.....))))....... ( -29.80)
>DroEre_CAF1 72928 110 + 1
AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCAAGGCCCAGUUCGGAUAA--GCAAACUGGGUCGAGAGGAUGGUAAAUAUAUA----GAAAAACGCAUACUAAAUGCACAAAUA
...((((((((((((....(((...((....))..(((((((((.(.....--.).))))))))))))..)))))).......))----))))...((((.....))))....... ( -31.21)
>DroYak_CAF1 71996 116 + 1
AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCAAGGCGCAGUUGGGAUAACUGCAAACUGGGUCGAGACGAUGCUAAAAAUAUAUAGGGAAAAACGCAUACUAAAUGCACAAAUA
..((((.((((.(((....(((...((....))..(((.(((((............))))).))))))..))))))).))))..............((((.....))))....... ( -23.60)
>consensus
AAAUUUCUGGCUAUCAACACUCUGCGGGGCACCGAGGCCCAGUUGGGAUAA__GCAAACUGGGUCGAGACGAAGGUAAAUAUAUA____GAAAAACGCAUACUAAAUGCACAAAUA
.........(((.((....(((...((....))..(((((((((.(........).))))))))))))..)).)))....................((((.....))))....... (-22.06 = -22.30 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:23 2006