Locus 1202

Sequence ID 2L_DroMel_CAF1
Location 3,239,953 – 3,240,073
Length 120
Max. P 0.993597
window1961

overview

Window 1

Location 3,239,953 – 3,240,073
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -28.06
Consensus MFE -25.38
Energy contribution -25.38
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.94
Structure conservation index 0.90
SVM decision value 2.41
SVM RNA-class probability 0.993597
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3239953 120 + 22407834
GGUGUUGCUUCUAAUUUGCAUAGUAGUUCGCAAUAGUUUGCAAAUUUACAGGCUUUUAUGUGCUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUU
......(((((((((((((...(((((.((.((.((((((........)))))).)).)).)))))....(((((..........)))))))))))))).))))(((......))).... ( -25.70)
>DroSec_CAF1 74111 120 + 1
GGUGUUGCUUCUAAUUUGCAUAGUAGUUCGCAAUAGUUUGCAAAUUUGCAAGCUUUUAUGUGCUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUC
......(((((((((((((...(((((.((.((.((((((((....)))))))).)).)).)))))....(((((..........)))))))))))))).))))(((......))).... ( -30.80)
>DroSim_CAF1 75822 120 + 1
GGUGUUGCUUCUAAUUUGCAUAGUAGUUCGCAAUAGUUUGCAAAUUUUCAGGCUUUUAUGUGCUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUC
......(((((((((((((...(((((.((.((.((((((........)))))).)).)).)))))....(((((..........)))))))))))))).))))(((......))).... ( -25.10)
>DroEre_CAF1 71121 120 + 1
GAUGUUGCUUCUAAUUUGCAUAGUAGUUUGCAAUAGUUUGCAAAUUUGCAUGCUUUCAUGUGUUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUC
......((((((((((((((..(((((((((((....))))))).)))).......((((.((((....))))))))............)))))))))).))))(((......))).... ( -27.80)
>DroYak_CAF1 70149 120 + 1
GAUGUUGCUUCUAAUUUGCAUAGUAGUUUGCAAUAGUUUGCAAAUUUGCAGGCUUUCAUGUGUUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUACAUUUGAUUC
(((((.((((((((((((((..(((((((((((....))))))).)))).((....((((.((((....))))))))..))........)))))))))).)))).....)))))...... ( -30.90)
>consensus
GGUGUUGCUUCUAAUUUGCAUAGUAGUUCGCAAUAGUUUGCAAAUUUGCAGGCUUUUAUGUGCUAUAAUUAAUCAUGCUCCGUUUUGAUUGCGAAUUGGUAAGCCAAUUAUAUUUGAUUC
......(((((((((((((...((((..((((..((((((((....))))))))....))))))))....(((((..........)))))))))))))).))))(((......))).... (-25.38 = -25.38 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:22 2006