| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 55,593 – 55,711 |
| Length | 118 |
| Max. P | 0.998117 |
| Location | 55,593 – 55,711 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.30 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -18.02 |
| Energy contribution | -17.37 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.61 |
| SVM decision value | 3.01 |
| SVM RNA-class probability | 0.998117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 55593 118 + 22407834 AUCAAA--AAGGUUUAUGCAGCAAAUAGCAUUAAAACUGUGAGAUCAGUUUGCGUAGAAAUAGACGAACGGACACGGCUAUAUAGAGCCGGCCGUUGAUACUGCUCAAUUAAUGUGGUCG (((...--....(((((((.((.....))....((((((......)))))))))))))........(((((...(((((......))))).))))))))((..(.........)..)).. ( -31.10) >DroSec_CAF1 28498 97 + 1 CUCAAAAAAAGGUUUAUGCAGCACAUAGCAUUAAAACUGUGAGAUCAGUUUGCGUAGAAUUAGACGAACGGGCAUGGCUAUAUCGAGUCAGCCGUCA----------------------- ............(((((((.((.....))....((((((......)))))))))))))....(((.....(((.(((((......))))))))))).----------------------- ( -23.90) >DroEre_CAF1 30024 108 + 1 -------AAAGUUUCAUGCAGU---UAGUUUCAAAACUGUGAGACCAGUUUCCGUAGAAAUGAACGGACGGACAUGAGU--AUCGACACGGCCGUUGAUACUGAUCACUUAAUGUGGUCG -------...(((((..(((((---(........)))))))))))..((((((((........)))))..)))...(((--((((((......)))))))))((((((.....)))))). ( -34.10) >consensus _UCAAA_AAAGGUUUAUGCAGCA_AUAGCAUUAAAACUGUGAGAUCAGUUUGCGUAGAAAUAGACGAACGGACAUGGCUAUAUCGAGACGGCCGUUGAUACUG_UCA_UUAAUGUGGUCG ...........((((((((........))....((((((......))))))........)))))).(((((...(((((......))))).)))))........................ (-18.02 = -17.37 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:13 2006