Locus 1198

Sequence ID 2L_DroMel_CAF1
Location 3,237,210 – 3,237,317
Length 107
Max. P 0.570474
window1949

overview

Window 9

Location 3,237,210 – 3,237,317
Length 107
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 87.96
Mean single sequence MFE -30.90
Consensus MFE -20.17
Energy contribution -22.05
Covariance contribution 1.88
Combinations/Pair 1.16
Mean z-score -1.92
Structure conservation index 0.65
SVM decision value 0.07
SVM RNA-class probability 0.570474
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3237210 107 + 22407834
------------UCCCUGGAAAAAAUUGCUGUUGCACGGCAAUUUUCAUGCGAGUUUCGUGCCACCAAUUGCAAAAUUAUUUCGUAUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG
------------.(((..(((((((((((((.....)))))))))).(((((((.....(((........))).......)))))))...)))..))).....((((((....)))))) ( -30.20)
>DroSec_CAF1 71346 119 + 1
UCCUGACUCAAUUCCCUGGAAAAAAUUGCUGUUGCAUGGCAAUUUUCAUGCGAGUUUCGGGCCACCAAUUGCCAAAUUAUUUCGUUUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG
....(((((..(((....)))(((((((((((...))))))))))).....)))))..(((((.((((....((((..........))))..)))))))))..((((((....)))))) ( -31.40)
>DroSim_CAF1 73039 119 + 1
UCCUGACUCAAUUCCCUGGAAAAAAUUGCUGCUGCAUGGCAAUUUUCAUGCGAGUUUCGGGCCACCAAUUGCCAAAUUAUUUCGUAUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG
....(((((..(((....)))(((((((((.......))))))))).....)))))..(((((.((((....(((((........)))))..)))))))))..((((((....)))))) ( -33.00)
>DroYak_CAF1 67230 119 + 1
UCGUGACUCAAUUUCGUGGAAAAAAUUGUUGUUGCAUGGCAAUUGGCUUGCGAAUUUCGGUGCGCCUAUUGCCAAAUUAUUUCGUAUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG
(((..(..((((((((((.((.((....)).)).))))).)))))..)..))).....((((.((((.....(((((........))))).....)))).))))(((((....))))). ( -29.00)
>consensus
UCCUGACUCAAUUCCCUGGAAAAAAUUGCUGUUGCAUGGCAAUUUUCAUGCGAGUUUCGGGCCACCAAUUGCCAAAUUAUUUCGUAUUUGUUUUGGGGCUCAUUAACAUGAAAAUGUUG
.............((((..((((((((((((.....))))))))))..((((((.....(((........))).......))))))....))..)))).....((((((....)))))) (-20.17 = -22.05 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:10 2006