Locus 1194

Sequence ID 2L_DroMel_CAF1
Location 3,233,361 – 3,233,480
Length 119
Max. P 0.500000
window1936

overview

Window 6

Location 3,233,361 – 3,233,480
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 83.11
Mean single sequence MFE -28.48
Consensus MFE -16.08
Energy contribution -16.78
Covariance contribution 0.70
Combinations/Pair 1.12
Mean z-score -1.98
Structure conservation index 0.56
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3233361 119 - 22407834
AAAAUGCUGGAGAAUUCUUAAAUCCGUGCAUGUUUCUAACAUCUUUUGCUGCUGCUCCUUGCAGCUACUUUUCGUGCUCGAAAAGAUGCACAUGCAAAUCUCGGAAAGUGUCAAAGAAA
....(((.(((...........)))((((((...................(((((.....)))))..(((((((....)))))))))))))..)))..(((..((.....))..))).. ( -30.80)
>DroSec_CAF1 67496 119 - 1
AAAAUGCUGGAGAAUUCUUAAAUCCGCGCAUGUUUCUAACAUCUUUUGCCGCUGCUCCUUGCAGCUACUUUUCGUGCUCGAAAAAAUGCACAUGCAAAUCUCGGAAAGUGUCAAAGAAA
...((((((((...........)))).))))..........(((((.((.(((((.....))))).(((((((((((..........))))((....))...))))))))).))))).. ( -28.50)
>DroSim_CAF1 69193 96 - 1
AAAAUGCUGGAGAAUUCUUAAAUCCGUGCAUGUUUCUAACAUCUUUUGCUGCUGCUCCUUGCAGCUA-----------------------CAUGCAAAUCUCGGAAAGUGUCAAAGAAA
...(((((.(((....)))...(((((((((((......((.....))..(((((.....))))).)-----------------------)))))).....)))).)))))........ ( -21.50)
>DroEre_CAF1 64437 118 - 1
AAAGUGCUGAAGAAU-CUUAAAUCAGUGCAGGUUUCCAACAUCUUUCACUGCUGCUGCUUGCAGCUACUUUUCUUGCUAGAAAAAAUGCACAUGCAAAUCUCGCAGAGUGUCAAAGAAA
...(..((((.....-......))))..)............((((((((((((((.....)))))........((((.(((.....(((....)))..))).))))))))..))))).. ( -28.20)
>DroYak_CAF1 63194 119 - 1
AAAGUGCUGAAGAAUUCUUAAAUCAGUGCAGAUUUCUAACAGCACUCACUGCUGCUCCUUGCUGCAAGUUUUCUUGUUAGAAAAAAUGCACAUGCAAAUCUCGGCAAGUGUCAAAGAAA
..(((((((.((((.(((...........))).))))..)))))))((((((((....((((((((..((((((....))))))..))))...))))....)))).))))......... ( -33.40)
>consensus
AAAAUGCUGGAGAAUUCUUAAAUCCGUGCAUGUUUCUAACAUCUUUUGCUGCUGCUCCUUGCAGCUACUUUUCGUGCUAGAAAAAAUGCACAUGCAAAUCUCGGAAAGUGUCAAAGAAA
...(..((.(((....))).......(((((((.................(((((.....)))))...((((((....)))))).....)))))))..........))..)........ (-16.08 = -16.78 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:59 2006