Locus 1193

Sequence ID 2L_DroMel_CAF1
Location 3,233,102 – 3,233,218
Length 116
Max. P 0.922152
window1935

overview

Window 5

Location 3,233,102 – 3,233,218
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.49
Mean single sequence MFE -24.68
Consensus MFE -19.70
Energy contribution -20.22
Covariance contribution 0.52
Combinations/Pair 1.10
Mean z-score -2.02
Structure conservation index 0.80
SVM decision value 1.15
SVM RNA-class probability 0.922152
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3233102 116 - 22407834
AAGCUGCGACAGUUUUGGGUAAUCUGGCACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUGGCAGUUGCAAAAAGAUGGUUACAAAAAAUAGUGACCCAAAAUGGUAAAAA
.(((((((((((((((.(((.....(((....))).........))).)))))))))((....)).))))))..........((((((........)))))).............. ( -26.94)
>DroSec_CAF1 67207 114 - 1
AAGCUGGGACAGUUUUGGGUAAUCUAGCACUCGCUUAAUAUCAAACCGAA-CUUGUUAUGAAAAUGGCAGUUGCAAAAAGACGGUUACAAAAAAUAGUGACCCAAAAUGGAAAAA-
...........(((((((((...(((((....)).........(((((((-((.(((((....))))))))).(.....).)))))........)))..))))))))).......- ( -24.40)
>DroSim_CAF1 68904 115 - 1
AAGCUGGGACAGUUUUGGGUAAUCUAGCACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUGGCAGUUGCAAAAAGACGGUUACAAAAAAUAGUGACCCAAAAUGGAAAAA-
...........(((((((((...(((((....)).........(((((..(((((((((....))))))))).........)))))........)))..))))))))).......- ( -25.90)
>DroEre_CAF1 64154 112 - 1
AAGCUGGGACAGUUUUGGGUAAUCUAGCACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUGGCAGUUGCAAAAGGAGGGUUACAAAAAAUAGUGACCCAAAAUGGAA----
.(((((.(((((((((.(((.....(((....))).........))).)))))))))((....))..))))).........(((((((........))))))).........---- ( -27.84)
>DroYak_CAF1 62902 113 - 1
AAGCUGGGACAGUUUCGGGUAAUCUAGAACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUAGCUGUUGCAAAAAGACGUUCACAAAAAAUAGUGACCCAAAAUGGAAA---
....((((...((((.((((........))))((......((.....)).(((.(((((....))))).)))))....))))..((((........)))))))).........--- ( -18.30)
>consensus
AAGCUGGGACAGUUUUGGGUAAUCUAGCACUCGCUUAAUAUCAAACCGAAAAUUGUUAUGAAAAUGGCAGUUGCAAAAAGACGGUUACAAAAAAUAGUGACCCAAAAUGGAAAAA_
((((((...))))))..((((....(((....)))...))))...(((..(((((((((....)))))))))..........((((((........)))))).....)))...... (-19.70 = -20.22 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:58 2006