Locus 1189

Sequence ID 2L_DroMel_CAF1
Location 3,228,188 – 3,228,300
Length 112
Max. P 0.865631
window1926

overview

Window 6

Location 3,228,188 – 3,228,300
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 99.64
Mean single sequence MFE -32.50
Consensus MFE -32.02
Energy contribution -32.22
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.99
SVM decision value 0.85
SVM RNA-class probability 0.865631
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3228188 112 - 22407834
UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC
........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. ( -33.00)
>DroSec_CAF1 62235 112 - 1
UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC
........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. ( -33.00)
>DroSim_CAF1 60746 112 - 1
UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC
........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. ( -33.00)
>DroEre_CAF1 58715 112 - 1
UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC
........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. ( -33.00)
>DroYak_CAF1 57644 112 - 1
UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCAGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC
........((((........)))).(..(((((((((((..((....))..))))........(((((.((.((....))...))..))))).......).))))))..).. ( -30.50)
>consensus
UUAAAGACCAUCAAAAUGAAGAUGAGAGUGGCGGCGCCGAAUCGCGGGACGUGGCAACUUAAAAUGCCGGCAACGUAAGUAAAGUCGGGCAUAUCUCAUGACCGCCAACCAC
........((((........)))).(..(((((((((((..((....))..))))........((((((((.((....))...))).))))).......).))))))..).. (-32.02 = -32.22 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:49 2006