Locus 1188

Sequence ID 2L_DroMel_CAF1
Location 3,226,175 – 3,226,274
Length 99
Max. P 0.661848
window1925

overview

Window 5

Location 3,226,175 – 3,226,274
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 94.47
Mean single sequence MFE -22.06
Consensus MFE -18.72
Energy contribution -19.32
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.85
SVM decision value 0.27
SVM RNA-class probability 0.661848
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3226175 99 - 22407834
GGCUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAGGCGCCAUUUUUGGUCAAACAAGCAAUUAUGUGCCUU-GACUACAUAAAUAGUUGUGAUUU
.((((((......(((....)))...................((((....))))...))))))..(((((((....-...)))))))............. ( -23.30)
>DroSec_CAF1 60243 99 - 1
GGCUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAGGCGCAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGU-CACUACAUAAACAGUUGUGAUUU
.((((...(((..(((....)))))).))))........(((((((((((((......)))).)))..))))))((-(((.((.......)).))))).. ( -25.70)
>DroSim_CAF1 58742 99 - 1
GGCUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCACGCGCAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGU-CACUACAUAAAUAGUUGUGAUUU
.((((((..(((((((....)))......((.........))........))))...))))))...........((-(((.((.......)).))))).. ( -22.90)
>DroEre_CAF1 56772 99 - 1
GCGUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAAGCACAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGU-CACUACAUAAAAAGUUGUGAUUU
((..((.....))(((....)))......)).........((((((((((((......)))).)))..))))).((-(((.((.......)).))))).. ( -20.90)
>DroYak_CAF1 55621 100 - 1
GGGUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAAGCAAAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGUGUACUACAUAAAAAGUUGUGAUUU
.(.((((..(((((((....)))......((.........))........))))...)))).)..(((((((........)))))))............. ( -17.50)
>consensus
GGCUUGUAAAUCAGGCGAAAGCCAUUAAAGCAUUAUUCAAGCGCAAUUUUUGGUCAAACAAGCAAUUAUGUGCCGU_CACUACAUAAAAAGUUGUGAUUU
.((((((..(((((((....)))......((.........))........))))...))))))..(((((((........)))))))............. (-18.72 = -19.32 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:48 2006