Locus 1186

Sequence ID 2L_DroMel_CAF1
Location 3,225,727 – 3,225,819
Length 92
Max. P 0.601424
window1923

overview

Window 3

Location 3,225,727 – 3,225,819
Length 92
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 71.42
Mean single sequence MFE -21.84
Consensus MFE -8.34
Energy contribution -7.26
Covariance contribution -1.08
Combinations/Pair 1.57
Mean z-score -1.74
Structure conservation index 0.38
SVM decision value 0.14
SVM RNA-class probability 0.601424
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3225727 92 + 22407834
AAAGAUGUGAGCUGGAUGUUAAUUAAAAUCACAAGAUCUAAUGUAU------------UGAAAGUUGGAGCAAAUUUCGUUUUGAAUGUG-C------------ACCAAUUUACAAA
..((((((((....(((....)))....)))))...)))......(------------((.(((((((.(((...(((.....)))..))-)------------.))))))).))). ( -20.00)
>DroSec_CAF1 59788 92 + 1
AAAGAUGUGAGCUGGAUGUUAAUCAAAAUCACAAGAUCUAAUCUAU------------UGAAAGGUGAAGCAAAAUUCGUUUCAAAUAUG-C------------ACCACUUUACAAA
..((((((((....(((....)))....)))))...)))......(------------((.((((((..(((................))-)------------..)))))).))). ( -16.19)
>DroSim_CAF1 58286 92 + 1
AAAGAUGUGAGCUGGAUGUUAAUUAAAAUCACAAGAUCUAAUCUAU------------CGAAAGGUGAAGCAAAAUUCGUUUCAAAUAUG-C------------ACUAAUUUACAAA
.....((((((.(((.(((.........................((------------(....)))(((((.......)))))......)-)------------)))).)))))).. ( -14.00)
>DroEre_CAF1 56326 117 + 1
AAAGAUGUGAGCAGGGUUUUAAUUAAGACCAUAAGAUCUAAUCCAUCACACUUGUCGUUGAAAGACGAGGCAGAUAUGGUUUUGAAUGUGGCACUACACAGCUUACCAAUCUAUGCA
..((((((((((..........(((((((((((.(((.......)))...((((((.......)))))).....))))))))))).((((......))))))))))..))))..... ( -32.90)
>DroYak_CAF1 55136 117 + 1
AAAGAUGUGAGCUGGGUUUUAAUUAGAAUCAUAAGACCUUAUCUAUCACACUUGCCGUUGCAAGGCGAAGCAAAUAUGGUUUUAAAUGUUGCACUAUAAAGUUUACCCAUCUACACA
.....((((((.(((((.....((((((((((((((.....))).((.(.(((((....)))))).))......))))))))))).......(((....)))..))))).)).)))) ( -26.10)
>consensus
AAAGAUGUGAGCUGGAUGUUAAUUAAAAUCACAAGAUCUAAUCUAU____________UGAAAGGUGAAGCAAAUUUCGUUUUAAAUGUG_C____________ACCAAUUUACAAA
.....(((((....(((....)))....)))))................................((((((.......))))))................................. ( -8.34 =  -7.26 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:46 2006