Locus 1184

Sequence ID 2L_DroMel_CAF1
Location 3,224,513 – 3,224,609
Length 96
Max. P 0.899227
window1921

overview

Window 1

Location 3,224,513 – 3,224,609
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.88
Mean single sequence MFE -26.33
Consensus MFE -13.19
Energy contribution -14.13
Covariance contribution 0.95
Combinations/Pair 1.12
Mean z-score -2.36
Structure conservation index 0.50
SVM decision value 1.01
SVM RNA-class probability 0.899227
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3224513 96 - 22407834
--------AC-UGG-AAAACUUUUUCCAGCCUCGUCACAGUUCCGAAAGAUUUCGAGUGUGACGAA-------------GCGAUCGCCAUCGAUUAAAUUAAGGGAA-CAAAAAGGUCAG
--------.(-(((-....((((((((.((.((((((((.(..((((....))))).)))))))).-------------))(((((....)))))........))).-..))))).)))) ( -27.90)
>DroPse_CAF1 73025 112 - 1
UACGAUAUAAUUUC-AAAACUUUGU---GACCAGUCACAGUUAGCCUGGUUUUAAACUGCCAUGGAACCCAAAGAGCUUGCGAUCUGCAUUGAUUAAAUUUAA---A-GAAAAAAGUCAC
...(((....((((-.......(((---((....)))))((.((((((((((((........)))))))...)).))).))((((......))))........---.-))))...))).. ( -19.90)
>DroSec_CAF1 58561 96 - 1
--------AC-UGG-AAAACUUUUUCCAGCCUCGUCACACUUCCGAAAGAUUUCGAGUGUGACGAA-------------GCGAUCGCCAUCGAUUAAAUUAAGGGAA-CAAAAAGGUCAG
--------.(-(((-....((((((((.((.((((((((((..((((....)))))))))))))).-------------))(((((....)))))........))).-..))))).)))) ( -31.80)
>DroSim_CAF1 57058 96 - 1
--------AC-UGG-AAAACUUUUUCCAGCCUCGUCACACUUCCGAAAGAUUUCGAGUGUGACGAA-------------GCGAUCGCCAUCGAUUAAAUUAAGGGAA-CAAAAAGGUCAG
--------.(-(((-....((((((((.((.((((((((((..((((....)))))))))))))).-------------))(((((....)))))........))).-..))))).)))) ( -31.80)
>DroEre_CAF1 55171 95 - 1
--------AC-CAG-AAAACUUUUUCCAGCCUCGUCACAGUUCAGAAGGAUUUCGAGUGUGACGAA-------------GCGAUCG-CAUCGAUUAAAUGAAAGCAA-CAAAAAGGUCAG
--------..-..(-(...((((((...((.((((((((.(((.(((....)))))))))))))).-------------))(((((-...)))))............-.)))))).)).. ( -22.80)
>DroYak_CAF1 53888 98 - 1
--------AC-UGCAAAAACUUUUUUCAGCCUCGUCACAGUUCAGAAAGAUUUCGAGUGUGACGAA-------------GCGAUCGCCAUCGAUUAAAUUAAAGGAACCAAAAAGGUCAG
--------.(-((.....((((((((..((.((((((((.(((.(((....)))))))))))))).-------------))(((((....)))))..............))))))))))) ( -23.80)
>consensus
________AC_UGG_AAAACUUUUUCCAGCCUCGUCACAGUUCCGAAAGAUUUCGAGUGUGACGAA_____________GCGAUCGCCAUCGAUUAAAUUAAAGGAA_CAAAAAGGUCAG
..................(((((((......((((((((.(((.(((....))))))))))))))................((((......))))...............)))))))... (-13.19 = -14.13 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:44 2006